View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19708_low_13 (Length: 335)
Name: NF19708_low_13
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19708_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 24399483 - 24399182
Alignment:
| Q |
1 |
gagacaactctgaaggttttaacactgctgcatttccagcagctatagctcctatcagtggctccaaagacactcctgtgnnnnnnnataggttacaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24399483 |
gagacaactctgaaggttttaacactgctgcatttccagcagctatagctcctatcagtggctccaaagacactcctgtgtttttttataggttacaaaa |
24399384 |
T |
|
| Q |
101 |
tattatattacgagctcaaatctatgaagactctaacaaaataacgaaaaaaattatacgcnnnnnnnnttaaagttggtcggtaaattttgcatctcta |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
24399383 |
tattatgttacgagctcaaatctatgaagactctaacaaaataacgaaaaaaatta----------------aagttggtcggtaaatttcgcatctcta |
24399300 |
T |
|
| Q |
201 |
acacttaactacggaattagaatcagatttccaattttccgtctctaaatttttgtcgttgtttcaactttatctagtaattgaatgactgtgattttgg |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24399299 |
acacttaactacgaaattagaatcagatttccaattttccgtctctaaatttttgtcgttgtttcaactttatctagtaattgaatgactgtgattttgg |
24399200 |
T |
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| Q |
301 |
ttcaaagcaagaagtatt |
318 |
Q |
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|||||||||||||||||| |
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| T |
24399199 |
ttcaaagcaagaagtatt |
24399182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 41843191 - 41843117
Alignment:
| Q |
5 |
caactctgaaggttttaacactgctgcatttccagcagctatagctcctatcagtggctccaaagacactcctgt |
79 |
Q |
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||||||||||||||||| ||||| |||||||||||||||| ||||| || | ||||||||| |||| |||||| |
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| T |
41843191 |
caactctgaaggttttaggactgcaacatttccagcagctatggctccaattaatggctccaaggacagtcctgt |
41843117 |
T |
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