View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19708_low_14 (Length: 321)

Name: NF19708_low_14
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19708_low_14
NF19708_low_14
[»] chr8 (13 HSPs)
chr8 (1-305)||(37210062-37210355)
chr8 (2-47)||(9047084-9047127)
chr8 (1-30)||(40102052-40102081)
chr8 (1-29)||(6105449-6105477)
chr8 (1-29)||(9550420-9550448)
chr8 (1-29)||(11879503-11879531)
chr8 (1-29)||(11896919-11896947)
chr8 (1-29)||(12659082-12659110)
chr8 (1-29)||(29509296-29509324)
chr8 (1-29)||(34970237-34970265)
chr8 (1-29)||(35633982-35634010)
chr8 (1-29)||(35967419-35967447)
chr8 (1-29)||(45101426-45101454)
[»] chr2 (10 HSPs)
chr2 (193-233)||(40556769-40556809)
chr2 (6-52)||(15820058-15820104)
chr2 (1-30)||(7086137-7086166)
chr2 (1-29)||(6851672-6851700)
chr2 (1-29)||(7498004-7498032)
chr2 (1-29)||(14797663-14797691)
chr2 (1-29)||(31635823-31635851)
chr2 (1-29)||(41868382-41868410)
chr2 (1-29)||(42665825-42665853)
chr2 (1-29)||(43650562-43650590)
[»] chr7 (8 HSPs)
chr7 (1-47)||(7077766-7077813)
chr7 (1-29)||(1790021-1790049)
chr7 (1-29)||(5378657-5378685)
chr7 (1-29)||(9055297-9055325)
chr7 (1-29)||(19426610-19426638)
chr7 (1-56)||(22330644-22330697)
chr7 (1-29)||(28824533-28824561)
chr7 (1-29)||(29609877-29609905)
[»] chr4 (19 HSPs)
chr4 (1-47)||(31275157-31275204)
chr4 (1-47)||(42490923-42490967)
chr4 (1-47)||(43982909-43982955)
chr4 (1-30)||(25523211-25523240)
chr4 (1-30)||(46911927-46911956)
chr4 (1-30)||(53583141-53583170)
chr4 (1-29)||(1562549-1562577)
chr4 (1-29)||(2812606-2812634)
chr4 (1-29)||(12241088-12241116)
chr4 (1-29)||(17363260-17363288)
chr4 (1-29)||(29513709-29513737)
chr4 (1-29)||(33820349-33820377)
chr4 (1-29)||(39881043-39881071)
chr4 (1-29)||(45274295-45274323)
chr4 (1-29)||(46794514-46794542)
chr4 (1-29)||(49424833-49424861)
chr4 (1-29)||(51224851-51224879)
chr4 (1-29)||(55595979-55596007)
chr4 (1-29)||(56025286-56025314)
[»] chr1 (15 HSPs)
chr1 (1-47)||(45272173-45272217)
chr1 (1-47)||(51571418-51571462)
chr1 (1-49)||(5477176-5477222)
chr1 (1-30)||(39010843-39010872)
chr1 (1-30)||(50141948-50141977)
chr1 (1-29)||(5368054-5368082)
chr1 (1-29)||(18541064-18541092)
chr1 (1-29)||(21441666-21441694)
chr1 (1-29)||(21728247-21728275)
chr1 (1-29)||(24611874-24611902)
chr1 (1-29)||(27810260-27810288)
chr1 (1-29)||(33422232-33422260)
chr1 (1-29)||(50017436-50017464)
chr1 (1-29)||(50226892-50226920)
chr1 (1-29)||(52417561-52417589)
[»] chr6 (10 HSPs)
chr6 (1-30)||(8395371-8395400)
chr6 (1-47)||(34021185-34021233)
chr6 (1-29)||(9954578-9954606)
chr6 (1-29)||(14094941-14094969)
chr6 (1-29)||(17835642-17835670)
chr6 (1-29)||(19789089-19789117)
chr6 (1-29)||(21506366-21506394)
chr6 (1-29)||(25924877-25924905)
chr6 (1-29)||(28965853-28965881)
chr6 (1-29)||(29383587-29383615)
[»] chr3 (14 HSPs)
chr3 (1-30)||(8066384-8066413)
chr3 (1-30)||(37303087-37303116)
chr3 (1-29)||(622473-622501)
chr3 (1-29)||(6126484-6126512)
chr3 (1-29)||(11335315-11335343)
chr3 (1-29)||(26279914-26279942)
chr3 (1-29)||(32008063-32008091)
chr3 (1-29)||(41877718-41877746)
chr3 (1-29)||(43900770-43900798)
chr3 (1-29)||(44334814-44334842)
chr3 (1-29)||(47988498-47988526)
chr3 (1-29)||(47997785-47997813)
chr3 (1-29)||(48007072-48007100)
chr3 (1-29)||(48649610-48649638)
[»] scaffold0172 (1 HSPs)
scaffold0172 (1-29)||(17005-17033)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-29)||(6847-6875)
[»] chr5 (6 HSPs)
chr5 (1-29)||(6046343-6046371)
chr5 (1-29)||(21023328-21023356)
chr5 (1-29)||(31708400-31708428)
chr5 (1-29)||(34381042-34381070)
chr5 (1-29)||(39595302-39595330)
chr5 (1-29)||(40223798-40223826)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 37210062 - 37210355
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtgttgtacaaatatcatttatgttatcttttgtatgttgggataaaaagagttgttgagggaatgggacaaa 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37210062 tatgagagagaaagttgtcaaaaagttgtgttgtacgaatatcatttctcttatcttttgtatgttgggataaaaagagttgttgagggaatgggacaaa 37210161  T
Q  101 ttagattgtactatgaaggagtttgcgtgttgggtgggtgagaccgttgcaaaggttgtatttgtaaccaaatacagaaagnnnnnnnnnggagggaatg 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||    
T  37210162 ttagattgtactatgaaggagtatgcgtgttgggtgggtgagaccgttgcaaaggttgtatttgtaaccaaatacagaaa-----aaaaaggagggaatg 37210256  T
Q  201 gaccacatgctaaacatacccaaaaatggaaaagaatttattacctttatctttatctttgatttcatttcattttgtttcaatctctggtttgggtcat 300  Q
    ||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  37210257 gaccacatgctaaacatacccaaaaatggaaaagaattta------ttatctttatctttgatttcatttcattttgtttcaatgtttggtttgggtcat 37210350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 9047084 - 9047127
Alignment:
Q  2 atgagagagaaagttgtcaaaaagttgtgttgtacaaatatcattt 47  Q
    |||||||||||||||||||||||||   ||||||||||||||||||    
T  9047084 atgagagagaaagttgtcaaaaagt--ggttgtacaaatatcattt 9047127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 40102081 - 40102052
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtg 30  Q
    ||||||||||||||||||||||||||||||    
T  40102081 tatgagagagaaagttgtcaaaaagttgtg 40102052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 6105449 - 6105477
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  6105449 tatgagagagaaagttgtcaaaaagttgt 6105477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 9550420 - 9550448
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  9550420 tatgagagagaaagttgtcaaaaagttgt 9550448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 11879503 - 11879531
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  11879503 tatgagagagaaagttgtcaaaaagttgt 11879531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 11896919 - 11896947
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  11896919 tatgagagagaaagttgtcaaaaagttgt 11896947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 12659110 - 12659082
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  12659110 tatgagagagaaagttgtcaaaaagttgt 12659082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29509324 - 29509296
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  29509324 tatgagagagaaagttgtcaaaaagttgt 29509296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 34970265 - 34970237
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  34970265 tatgagagagaaagttgtcaaaaagttgt 34970237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 35633982 - 35634010
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  35633982 tatgagagagaaagttgtcaaaaagttgt 35634010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 35967419 - 35967447
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  35967419 tatgagagagaaagttgtcaaaaagttgt 35967447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45101454 - 45101426
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  45101454 tatgagagagaaagttgtcaaaaagttgt 45101426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 40556769 - 40556809
Alignment:
Q  193 agggaatggaccacatgctaaacatacccaaaaatggaaaa 233  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  40556769 agggaatggaccacatgttaaacatacccaaaaatggaaaa 40556809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 15820058 - 15820104
Alignment:
Q  6 gagagaaagttgtcaaaaagttgtgttgtacaaatatcatttatgtt 52  Q
    |||||| ||||||| ||||||||| ||||||||||||||||| ||||    
T  15820058 gagagagagttgtccaaaagttgtattgtacaaatatcatttctgtt 15820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 7086137 - 7086166
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtg 30  Q
    ||||||||||||||||||||||||||||||    
T  7086137 tatgagagagaaagttgtcaaaaagttgtg 7086166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 6851672 - 6851700
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  6851672 tatgagagagaaagttgtcaaaaagttgt 6851700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 7498004 - 7498032
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  7498004 tatgagagagaaagttgtcaaaaagttgt 7498032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 14797663 - 14797691
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  14797663 tatgagagagaaagttgtcaaaaagttgt 14797691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 31635823 - 31635851
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  31635823 tatgagagagaaagttgtcaaaaagttgt 31635851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 41868382 - 41868410
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  41868382 tatgagagagaaagttgtcaaaaagttgt 41868410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 42665825 - 42665853
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  42665825 tatgagagagaaagttgtcaaaaagttgt 42665853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 43650562 - 43650590
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  43650562 tatgagagagaaagttgtcaaaaagttgt 43650590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7077766 - 7077813
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt-gttgtacaaatatcattt 47  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  7077766 tatgagagagaaagttgtcaagaagttgtcgttgtacaaatatcattt 7077813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 1790049 - 1790021
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  1790049 tatgagagagaaagttgtcaaaaagttgt 1790021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5378685 - 5378657
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  5378685 tatgagagagaaagttgtcaaaaagttgt 5378657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 9055325 - 9055297
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  9055325 tatgagagagaaagttgtcaaaaagttgt 9055297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19426638 - 19426610
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  19426638 tatgagagagaaagttgtcaaaaagttgt 19426610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22330644 - 22330697
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtgttgtacaaatatcatttatgttatct 56  Q
    |||||||||||||||||||| |||||   |||||||||||||||||| | ||||||    
T  22330644 tatgagagagaaagttgtcacaaagt--ggttgtacaaatatcatttctcttatct 22330697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 28824561 - 28824533
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  28824561 tatgagagagaaagttgtcaaaaagttgt 28824533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29609877 - 29609905
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  29609877 tatgagagagaaagttgtcaaaaagttgt 29609905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 31275204 - 31275157
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt-gttgtacaaatatcattt 47  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||    
T  31275204 tatgagagagaaagttgtcaaaaagttgtcactgtacaaatatcattt 31275157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42490967 - 42490923
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtgttgtacaaatatcattt 47  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  42490967 tatgagagagaaagttgtcaaaaagt--ggttgtacaaatatcattt 42490923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 43982955 - 43982909
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtgttgtacaaatatcattt 47  Q
    ||||||||||||| ||||  |||||||||||||||||| ||||||||    
T  43982955 tatgagagagaaaattgtataaaagttgtgttgtacaactatcattt 43982909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 25523211 - 25523240
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtg 30  Q
    ||||||||||||||||||||||||||||||    
T  25523211 tatgagagagaaagttgtcaaaaagttgtg 25523240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 46911956 - 46911927
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtg 30  Q
    ||||||||||||||||||||||||||||||    
T  46911956 tatgagagagaaagttgtcaaaaagttgtg 46911927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 53583141 - 53583170
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtg 30  Q
    ||||||||||||||||||||||||||||||    
T  53583141 tatgagagagaaagttgtcaaaaagttgtg 53583170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 1562549 - 1562577
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  1562549 tatgagagagaaagttgtcaaaaagttgt 1562577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2812606 - 2812634
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  2812606 tatgagagagaaagttgtcaaaaagttgt 2812634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 12241116 - 12241088
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  12241116 tatgagagagaaagttgtcaaaaagttgt 12241088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 17363288 - 17363260
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  17363288 tatgagagagaaagttgtcaaaaagttgt 17363260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29513709 - 29513737
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  29513709 tatgagagagaaagttgtcaaaaagttgt 29513737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 33820349 - 33820377
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  33820349 tatgagagagaaagttgtcaaaaagttgt 33820377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 39881043 - 39881071
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  39881043 tatgagagagaaagttgtcaaaaagttgt 39881071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45274323 - 45274295
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  45274323 tatgagagagaaagttgtcaaaaagttgt 45274295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 46794514 - 46794542
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  46794514 tatgagagagaaagttgtcaaaaagttgt 46794542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 49424833 - 49424861
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  49424833 tatgagagagaaagttgtcaaaaagttgt 49424861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 51224851 - 51224879
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  51224851 tatgagagagaaagttgtcaaaaagttgt 51224879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 55596007 - 55595979
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  55596007 tatgagagagaaagttgtcaaaaagttgt 55595979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 56025314 - 56025286
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  56025314 tatgagagagaaagttgtcaaaaagttgt 56025286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 45272173 - 45272217
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtgttgtacaaatatcattt 47  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  45272173 tatgagagagaaagttgtcaaaaagt--ggttgtacaaatatcattt 45272217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 51571462 - 51571418
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtgttgtacaaatatcattt 47  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||    
T  51571462 tatgagagagaaagttgtcaaaaagt--ggttgtacaaatatcattt 51571418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5477176 - 5477222
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtgttgtacaaatatcatttat 49  Q
    |||||||||||||||||||| |||||   ||||||||||||||||||||    
T  5477176 tatgagagagaaagttgtcacaaagt--ggttgtacaaatatcatttat 5477222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 39010872 - 39010843
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtg 30  Q
    ||||||||||||||||||||||||||||||    
T  39010872 tatgagagagaaagttgtcaaaaagttgtg 39010843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 50141948 - 50141977
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtg 30  Q
    ||||||||||||||||||||||||||||||    
T  50141948 tatgagagagaaagttgtcaaaaagttgtg 50141977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 5368054 - 5368082
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  5368054 tatgagagagaaagttgtcaaaaagttgt 5368082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 18541064 - 18541092
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  18541064 tatgagagagaaagttgtcaaaaagttgt 18541092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 21441694 - 21441666
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  21441694 tatgagagagaaagttgtcaaaaagttgt 21441666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 21728247 - 21728275
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  21728247 tatgagagagaaagttgtcaaaaagttgt 21728275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 24611902 - 24611874
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  24611902 tatgagagagaaagttgtcaaaaagttgt 24611874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 27810260 - 27810288
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  27810260 tatgagagagaaagttgtcaaaaagttgt 27810288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 33422232 - 33422260
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  33422232 tatgagagagaaagttgtcaaaaagttgt 33422260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 50017436 - 50017464
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  50017436 tatgagagagaaagttgtcaaaaagttgt 50017464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 50226892 - 50226920
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  50226892 tatgagagagaaagttgtcaaaaagttgt 50226920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 52417589 - 52417561
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  52417589 tatgagagagaaagttgtcaaaaagttgt 52417561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 8395400 - 8395371
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtg 30  Q
    ||||||||||||||||||||||||||||||    
T  8395400 tatgagagagaaagttgtcaaaaagttgtg 8395371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 34021185 - 34021233
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt--gttgtacaaatatcattt 47  Q
    ||||||||||||| |||||||||| ||||  ||||||||||||||||||    
T  34021185 tatgagagagaaaattgtcaaaaaattgttggttgtacaaatatcattt 34021233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 9954606 - 9954578
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  9954606 tatgagagagaaagttgtcaaaaagttgt 9954578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 14094969 - 14094941
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  14094969 tatgagagagaaagttgtcaaaaagttgt 14094941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 17835670 - 17835642
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  17835670 tatgagagagaaagttgtcaaaaagttgt 17835642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 19789089 - 19789117
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  19789089 tatgagagagaaagttgtcaaaaagttgt 19789117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 21506394 - 21506366
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  21506394 tatgagagagaaagttgtcaaaaagttgt 21506366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 25924877 - 25924905
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  25924877 tatgagagagaaagttgtcaaaaagttgt 25924905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 28965853 - 28965881
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  28965853 tatgagagagaaagttgtcaaaaagttgt 28965881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29383615 - 29383587
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  29383615 tatgagagagaaagttgtcaaaaagttgt 29383587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 8066413 - 8066384
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtg 30  Q
    ||||||||||||||||||||||||||||||    
T  8066413 tatgagagagaaagttgtcaaaaagttgtg 8066384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 37303087 - 37303116
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgtg 30  Q
    ||||||||||||||||||||||||||||||    
T  37303087 tatgagagagaaagttgtcaaaaagttgtg 37303116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 622473 - 622501
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  622473 tatgagagagaaagttgtcaaaaagttgt 622501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6126512 - 6126484
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  6126512 tatgagagagaaagttgtcaaaaagttgt 6126484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 11335315 - 11335343
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  11335315 tatgagagagaaagttgtcaaaaagttgt 11335343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 26279942 - 26279914
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  26279942 tatgagagagaaagttgtcaaaaagttgt 26279914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 32008091 - 32008063
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  32008091 tatgagagagaaagttgtcaaaaagttgt 32008063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 41877746 - 41877718
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  41877746 tatgagagagaaagttgtcaaaaagttgt 41877718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 43900770 - 43900798
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  43900770 tatgagagagaaagttgtcaaaaagttgt 43900798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 44334814 - 44334842
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  44334814 tatgagagagaaagttgtcaaaaagttgt 44334842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 47988498 - 47988526
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  47988498 tatgagagagaaagttgtcaaaaagttgt 47988526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 47997785 - 47997813
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  47997785 tatgagagagaaagttgtcaaaaagttgt 47997813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 48007072 - 48007100
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  48007072 tatgagagagaaagttgtcaaaaagttgt 48007100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 48649638 - 48649610
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  48649638 tatgagagagaaagttgtcaaaaagttgt 48649610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 17033 - 17005
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  17033 tatgagagagaaagttgtcaaaaagttgt 17005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6875 - 6847
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  6875 tatgagagagaaagttgtcaaaaagttgt 6847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6046371 - 6046343
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  6046371 tatgagagagaaagttgtcaaaaagttgt 6046343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 21023356 - 21023328
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  21023356 tatgagagagaaagttgtcaaaaagttgt 21023328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 31708428 - 31708400
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  31708428 tatgagagagaaagttgtcaaaaagttgt 31708400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 34381070 - 34381042
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  34381070 tatgagagagaaagttgtcaaaaagttgt 34381042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39595330 - 39595302
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  39595330 tatgagagagaaagttgtcaaaaagttgt 39595302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 40223798 - 40223826
Alignment:
Q  1 tatgagagagaaagttgtcaaaaagttgt 29  Q
    |||||||||||||||||||||||||||||    
T  40223798 tatgagagagaaagttgtcaaaaagttgt 40223826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University