View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19708_low_15 (Length: 317)
Name: NF19708_low_15
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19708_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 12 - 315
Target Start/End: Complemental strand, 35595115 - 35594809
Alignment:
| Q |
12 |
caaatataactccctgcacccccaaatgtgtacaaataattcaagacttacataaccgtaacctccatgaccccattctttccgccacaaattttgaata |
111 |
Q |
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||||| ||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
35595115 |
caaatgtaactccctgcacccccgaatgtgtacaaacagttcaagacttacataaccgtaacctccatgaccccactctttccgccacgaattttgaata |
35595016 |
T |
|
| Q |
112 |
acaacaaannnnnnnctttct---ttcttccacatccaacaattagggcacaatgacgaacttgtttagatcctttccatcgaaaaagagaatatatctc |
208 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
35595015 |
acaacaaatttttttctttctttcttcttccacatccaacaattagggcacagtgacgaccttgtttagatcctttccatcgagaaagagaatatatctc |
35594916 |
T |
|
| Q |
209 |
gggagaaggttttttgattttgtggcttttaacttttcgggtcgggtaactaatatcgtgtcccattctttagccaaactgtctttgaccactaataata |
308 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35594915 |
gggagaaggttttttgatttggtggcttttaacttttcgggtcgggtaactaatgtcgtgtcccattctttagccaaactgactttgaccactaataata |
35594816 |
T |
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| Q |
309 |
ggatttg |
315 |
Q |
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||||||| |
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| T |
35594815 |
ggatttg |
35594809 |
T |
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