View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19708_low_17 (Length: 282)
Name: NF19708_low_17
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19708_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 20 - 274
Target Start/End: Original strand, 38122256 - 38122511
Alignment:
| Q |
20 |
atactaccaccttcctactaagattttaggaccgttt-gatggtcaggataagatagagcatgtatgatcagagttgactaatattgtaaaaatggtggc |
118 |
Q |
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| T |
38122256 |
atactaccaccttcctactaagattttaggaccgttttggtggtcaggataagatagagcatgtatgattagagttggctaatattgtaaaaatggtggc |
38122355 |
T |
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| Q |
119 |
gaataatgtttagtaactaagttgaataacatctctaataaaaagtcataatcatatttgataatcaaatggtaaccacgagccatagtcacatttgtac |
218 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38122356 |
gaataatgtttagtaagtaagttgaataacatctctaataaaaagtcataattatatttgataatcaaatggtaaccactagccatagtcacatttgtac |
38122455 |
T |
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| Q |
219 |
atctttatatggttgctttgcaaagacttctatatgtttaaaactatgaaacaaat |
274 |
Q |
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| T |
38122456 |
atctttatatggttgctttgcaaagacttctatatgtttaaaactaagaaacaaat |
38122511 |
T |
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