View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19708_low_19 (Length: 255)

Name: NF19708_low_19
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19708_low_19
NF19708_low_19
[»] chr1 (20 HSPs)
chr1 (49-255)||(31290830-31291036)
chr1 (54-164)||(6583118-6583228)
chr1 (54-221)||(27102260-27102427)
chr1 (57-220)||(34774943-34775105)
chr1 (76-163)||(16147649-16147736)
chr1 (76-162)||(16577352-16577438)
chr1 (63-202)||(9313172-9313310)
chr1 (54-161)||(10785364-10785471)
chr1 (76-164)||(32882464-32882552)
chr1 (77-154)||(27031750-27031827)
chr1 (77-164)||(7857747-7857834)
chr1 (79-162)||(41126379-41126462)
chr1 (77-155)||(24659023-24659101)
chr1 (54-125)||(32864502-32864573)
chr1 (111-164)||(52278430-52278483)
chr1 (49-153)||(4651843-4651947)
chr1 (77-128)||(24684414-24684465)
chr1 (146-221)||(46768343-46768418)
chr1 (77-152)||(46814379-46814454)
chr1 (79-115)||(27905501-27905537)
[»] chr7 (14 HSPs)
chr7 (54-255)||(8745222-8745425)
chr7 (54-255)||(24324609-24324809)
chr7 (59-221)||(42533105-42533260)
chr7 (54-161)||(1320864-1320971)
chr7 (54-164)||(6716638-6716748)
chr7 (58-165)||(44755662-44755770)
chr7 (77-164)||(34390056-34390143)
chr7 (51-164)||(3478418-3478531)
chr7 (76-159)||(23983298-23983381)
chr7 (77-142)||(35745748-35745813)
chr7 (76-113)||(36449175-36449212)
chr7 (77-121)||(41089691-41089735)
chr7 (77-152)||(48161938-48162012)
chr7 (77-157)||(33435203-33435284)
[»] scaffold0050 (1 HSPs)
scaffold0050 (54-255)||(36778-36978)
[»] chr3 (18 HSPs)
chr3 (54-255)||(25647755-25647955)
chr3 (54-255)||(14879505-14879708)
chr3 (54-255)||(37123451-37123652)
chr3 (77-164)||(23328250-23328337)
chr3 (54-251)||(28937527-28937726)
chr3 (54-164)||(14755166-14755276)
chr3 (55-164)||(39021178-39021287)
chr3 (54-231)||(14194011-14194179)
chr3 (58-169)||(33143845-33143956)
chr3 (145-250)||(50518903-50519008)
chr3 (100-255)||(37998972-37999125)
chr3 (77-152)||(21342629-21342704)
chr3 (77-156)||(40023480-40023559)
chr3 (77-164)||(45398890-45398977)
chr3 (54-125)||(5556640-5556711)
chr3 (95-164)||(4170855-4170923)
chr3 (77-164)||(43012469-43012557)
chr3 (76-124)||(46358328-46358376)
[»] chr5 (12 HSPs)
chr5 (54-251)||(8297537-8297738)
chr5 (54-221)||(26045810-26045976)
chr5 (54-255)||(14302254-14302442)
chr5 (53-164)||(7391938-7392049)
chr5 (54-252)||(33258693-33258894)
chr5 (89-248)||(26405364-26405522)
chr5 (67-161)||(7195145-7195239)
chr5 (54-141)||(21402761-21402849)
chr5 (54-125)||(13954175-13954246)
chr5 (54-165)||(25992076-25992187)
chr5 (76-162)||(17853971-17854056)
chr5 (56-111)||(39024397-39024453)
[»] chr4 (18 HSPs)
chr4 (54-255)||(48098402-48098606)
chr4 (56-252)||(49528143-49528339)
chr4 (56-245)||(41117788-41117977)
chr4 (58-221)||(25753245-25753408)
chr4 (56-255)||(38637044-38637243)
chr4 (54-164)||(53823322-53823433)
chr4 (54-252)||(22810974-22811172)
chr4 (54-164)||(39420915-39421025)
chr4 (54-220)||(16832867-16833033)
chr4 (76-164)||(19815122-19815210)
chr4 (77-164)||(31050561-31050648)
chr4 (58-126)||(2061678-2061746)
chr4 (77-164)||(2825877-2825964)
chr4 (77-164)||(35341239-35341325)
chr4 (76-251)||(19673191-19673365)
chr4 (87-164)||(19311276-19311353)
chr4 (54-163)||(49747596-49747706)
chr4 (76-125)||(43374035-43374084)
[»] chr6 (7 HSPs)
chr6 (54-221)||(20701647-20701815)
chr6 (54-255)||(3880406-3880610)
chr6 (57-228)||(15120437-15120606)
chr6 (54-125)||(13423535-13423606)
chr6 (76-162)||(32935243-32935329)
chr6 (136-164)||(13423603-13423631)
chr6 (54-125)||(26534656-26534728)
[»] scaffold0063 (1 HSPs)
scaffold0063 (54-220)||(58196-58362)
[»] chr8 (9 HSPs)
chr8 (54-196)||(17656872-17657014)
chr8 (54-162)||(8862505-8862614)
chr8 (76-148)||(12197986-12198058)
chr8 (76-148)||(12442414-12442486)
chr8 (54-125)||(10248494-10248565)
chr8 (77-156)||(15821287-15821366)
chr8 (77-164)||(38577690-38577777)
chr8 (77-154)||(35816153-35816230)
chr8 (49-125)||(35062521-35062597)
[»] scaffold0200 (1 HSPs)
scaffold0200 (54-164)||(19452-19563)
[»] chr2 (14 HSPs)
chr2 (56-255)||(7696034-7696232)
chr2 (54-148)||(41086715-41086809)
chr2 (54-164)||(1269552-1269663)
chr2 (58-164)||(34230274-34230380)
chr2 (54-220)||(37770488-37770653)
chr2 (54-164)||(10173479-10173590)
chr2 (76-164)||(16952284-16952372)
chr2 (76-164)||(17022949-17023037)
chr2 (76-164)||(17060255-17060343)
chr2 (79-164)||(5254352-5254437)
chr2 (80-164)||(7874388-7874472)
chr2 (56-138)||(13337345-13337427)
chr2 (77-164)||(14106422-14106509)
chr2 (176-255)||(12343011-12343088)
[»] scaffold0119 (1 HSPs)
scaffold0119 (54-164)||(42039-42150)


Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 49 - 255
Target Start/End: Complemental strand, 31291036 - 31290830
Alignment:
Q  49 ctagattggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtg 148  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31291036 ctagattggttttgggctttttatggtttctttcggtggatcggaggtcgagaggtggtggaagttgcttgatctttcggataggagcttttcggatgtg 31290937  T
Q  149 gctcagctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatggttggctattgtttttacagtg 248  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||    
T  31290936 gctcagctttggtgttctagatgagccgtttattttttaggggtgtttttctttgagggtgagtagtgacgatggatggttggctatcatttttacagtg 31290837  T
Q  249 gtcgttt 255  Q
    |||||||    
T  31290836 gtcgttt 31290830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 6583228 - 6583118
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    ||||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||    
T  6583228 ttggttttttgctttttatggtttctttcggtgaatcggaggtcgagaggtggtggaagctgattgatctttcagataggagcttttcggatgcggctca 6583129  T
Q  154 gctttggtgtt 164  Q
    |||||||||||    
T  6583128 gctttggtgtt 6583118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 54 - 221
Target Start/End: Original strand, 27102260 - 27102427
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||| |||| | |||||||||    
T  27102260 ttggttttgggctttttacggtttctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcagataggagcgtttc-gttgtggctca 27102358  T
Q  154 gctttggtgttctgg-atgggccgtttattttttaggggt-gtttttctttgagggtgagtagtgacgat 221  Q
    ||||| |||||| || |||||   |  |||||| ||||||  |||||||||| |||||||||||||||||    
T  27102359 gctttagtgttcaggaatgggatttggatttttgaggggtattttttctttg-gggtgagtagtgacgat 27102427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 34774943 - 34775105
Alignment:
Q  57 gttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttga-tctttcggataggagctttt-cggatgtggctcag 154  Q
    |||||||||||||||||| ||||||||||| || |||||| |||||||||||||||||| |||| | |||| |||||||| |||| ||||||||||||||    
T  34774943 gttttgggctttttatggtttctttcggtgaattggaggttgagaggtggtggaagctgattgattgtttcagataggagtttttccggatgtggctcag 34775042  T
Q  155 ctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacga 220  Q
    ||||||||||  |||| ||  |||||||||||| |||||  |||| ||| ||||||||||||||||    
T  34775043 ctttggtgttgaggattgggagtttattttttacgggtg--tttcattg-gggtgagtagtgacga 34775105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 163
Target Start/End: Original strand, 16147649 - 16147736
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgt 163  Q
    |||||||||| |||||||||| ||||||||||| ||| ||  ||||||||| |||| |||||||||||||||||||||||||||||||    
T  16147649 ttctttcggtagatcggaggtggagaggtggtgaaagttgaatgatctttcagatatgagcttttcggatgtggctcagctttggtgt 16147736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 76 - 162
Target Start/End: Original strand, 16577352 - 16577438
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtg 162  Q
    |||||||||| ||| |||||| ||||||||||||||||||  |||||||| | ||||||||||||||||||||||||| ||||||||    
T  16577352 ttctttcggtagattggaggttgagaggtggtggaagctgaatgatctttggaataggagcttttcggatgtggctcaactttggtg 16577438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 9313310 - 9313172
Alignment:
Q  63 ggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtg 162  Q
    |||||||||||| ||||||||||||||||||||| || ||||||||| || ||  ||||| |||  ||| ||| |||||||||||||||||||||||||     
T  9313310 ggctttttatggtttctttcggtggatcggaggtggataggtggtggcagttgtatgatccttcaaatacgagtttttcggatgtggctcagctttggt- 9313212  T
Q  163 ttctggatgggccgtttattttttaggggtgtttttcttt 202  Q
    ||| |||  ||  ||||| |||| | ||||||||||||||    
T  9313211 ttcaggactgggagtttaattttgaagggtgtttttcttt 9313172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 161
Target Start/End: Complemental strand, 10785471 - 10785364
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctt-tcggataggagcttttcggatgtggctc 152  Q
    ||||||||||||||||||||  || ||||||||| |||||||||| ||||||||||||||||  |||| || || |||||||||||||||| || |||||    
T  10785471 ttggttttgggctttttatgattt-tttcggtggttcggaggtcgcgaggtggtggaagctgaatgattttctctgataggagcttttcgggtgcggctc 10785373  T
Q  153 agctttggt 161  Q
     ||||||||    
T  10785372 tgctttggt 10785364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 32882464 - 32882552
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    ||||||||||| ||||||| |||| |||||||| |||||   |||||||||||  |||||||||||| |||||||||||||||||||||    
T  32882464 ttctttcggtgaatcggagatcgacaggtggtgaaagcttaatgatctttcggtcaggagcttttcgaatgtggctcagctttggtgtt 32882552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 27031827 - 27031750
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcag 154  Q
    |||||||||||||||||||| ||||||| ||||||||||| || || ||||| || |||||||||| |||||||||||    
T  27031827 tctttcggtggatcggaggttgagaggttgtggaagctgcatgttcattcggttaagagcttttcgaatgtggctcag 27031750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 7857747 - 7857834
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    |||||||||||||||| ||||||||||| ||||||||||||||  | ||||| |||||||||||   ||||||||||| || ||||||    
T  7857747 tctttcggtggatcggtggtcgagaggttgtggaagctgcttgtccattcggttaggagcttttgaaatgtggctcagtttgggtgtt 7857834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 41126462 - 41126379
Alignment:
Q  79 tttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtg 162  Q
    ||||||||||| |||||| |||||||| |||||||||   ||||||| ||||||||||||||| ||||||| ||| ||||||||    
T  41126462 tttcggtggattggaggttgagaggtgctggaagctgaacgatcttttggataggagcttttcagatgtggatcaactttggtg 41126379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 24659023 - 24659101
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagc 155  Q
    |||||||||||||||||||||||||||| ||||||||  | || || ||||| ||| ||||||||| ||||||||||||    
T  24659023 tctttcggtggatcggaggtcgagaggttgtggaagcatcatgttcattcggttagaagcttttcgaatgtggctcagc 24659101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 32864573 - 32864502
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatcttt 125  Q
    ||||||||||||||||||||| ||||||  ||||||| ||||||| ||||||||||| | || |||||||||    
T  32864573 ttggttttgggctttttatggtttctttttgtggatcagaggtcgggaggtggtggatgatgtttgatcttt 32864502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 52278430 - 52278483
Alignment:
Q  111 agctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    |||||| ||||||||| |||||||| ||||||||||||||||| ||||| ||||    
T  52278430 agctgcatgatctttcagataggagtttttcggatgtggctcaactttgatgtt 52278483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 4651843 - 4651947
Alignment:
Q  49 ctagattggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtg 148  Q
    |||| |||||||||||||||||  |  ||| ||||||||| ||||||| | | ||||||||||||||  |||||||| |   ||||| | ||||||||||    
T  4651843 ctagtttggttttgggcttttttggtgttccttcggtggaccggaggttgcgcggtggtggaagctgaatgatctttagagaaggagttcttcggatgtg 4651942  T
Q  149 gctca 153  Q
    |||||    
T  4651943 gctca 4651947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 24684465 - 24684414
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcgg 128  Q
    |||||||||||||||||||||| ||||| ||||||| ||| ||||| |||||    
T  24684465 tctttcggtggatcggaggtcgcgaggttgtggaagatgcatgatccttcgg 24684414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 46768343 - 46768418
Alignment:
Q  146 gtggctcagctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgat 221  Q
    |||||| ||||||||||||| |||| ||  ||||| | || |||| | |||||||||| |||||||||||||||||    
T  46768343 gtggcttagctttggtgttcaggattgggagtttagtcttgagggttttttttctttgggggtgagtagtgacgat 46768418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 46814454 - 46814379
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctc 152  Q
    ||||||||||||||||| |||||||||| |  ||||||||  | || ||||  ||||||||||||| |||||||||    
T  46814454 tctttcggtggatcggatgtcgagaggttgcagaagctgcaagttcattcgattaggagcttttcgaatgtggctc 46814379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 27905501 - 27905537
Alignment:
Q  79 tttcggtggatcggaggtcgagaggtggtggaagctg 115  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  27905501 tttcggtggaccggaggttgagaggtggtggaagctg 27905537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 8745222 - 8745425
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  8745222 ttggttttgggctttttatggtttctttcggtggatcggaggtcgagaggttgtggaagctgcatgatctttcagataggagcttttcggatgtggctca 8745321  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatg--gttggctattgtttttacagtggtc 251  Q
    ||||||||||||  ||  ||  ||||| |||| ||||||||||||||||| ||||||||||||||||  ||||  ||||| |||||||||| || |||||    
T  8745322 gctttggtgttcaagactgggagtttaattttgaggggtgtttttctttgggggtgagtagtgacgaaggatggtgttggatattgttttttcattggtc 8745421  T
Q  252 gttt 255  Q
    ||||    
T  8745422 gttt 8745425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 54 - 255
Target Start/End: Complemental strand, 24324809 - 24324609
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||  ||||||||||| |||||||||||||| |||||||||    
T  24324809 ttggttttgggctttttatggtttctttaggtggatcggaggtcgaggggtggtggaagctgaatgatctttcggttaggagcttttcggctgtggctca 24324710  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatggttggctattgtttttacagtggtcgt 253  Q
    |||||||||||| ||| ||   ||||  |||| ||||||||||||||||  |||||||||||||||| || ||||||| ||| ||| ||||| |||||||    
T  24324709 gctttggtgttcaggacggagagttttattttgaggggtgtttttctttaggggtgagtagtgacga-tggtggttggatatcgttcttacaatggtcgt 24324611  T
Q  254 tt 255  Q
    ||    
T  24324610 tt 24324609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 221
Target Start/End: Complemental strand, 42533260 - 42533105
Alignment:
Q  59 tttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagcttt 158  Q
    |||||||||||||||| ||||||||||||||| ||||||| |||||||||| | |||   |||||||| |||| ||||||||||||| ||| ||||||||    
T  42533260 tttgggctttttatggtttctttcggtggatcagaggtcgtgaggtggtggcaactgaacgatctttcagataagagcttttcggatatggatcagcttt 42533161  T
Q  159 ggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgat 221  Q
    ||| ||| |||      ||||||||||||| |||||||||||||| ||| |||||||||||||    
T  42533160 ggt-ttcagga------gtttattttttagaggtgtttttctttgggggcgagtagtgacgat 42533105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 161
Target Start/End: Original strand, 1320864 - 1320971
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | |||  |||||  ||||||| || |||||| |||||||||||    
T  1320864 ttggttttgggctttttatggtttctttcggtggatcggaggtcgagagggggtggcaactgtatgatccctcggataagatcttttcagatgtggctca 1320963  T
Q  154 gctttggt 161  Q
     |||||||    
T  1320964 actttggt 1320971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 6716748 - 6716638
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatc-tttcggataggagcttttcggatgtggctc 152  Q
    ||||| ||||| ||||||||| |||||||||||||||| || |||||||||||||||||||| |||||| ||||||||| ||  ||| ||||||||||||    
T  6716748 ttggtcttgggttttttatggtttctttcggtggatcgaag-tcgagaggtggtggaagctgattgatcttttcggataagatttttccggatgtggctc 6716650  T
Q  153 agctttggtgtt 164  Q
    ||||||||||||    
T  6716649 agctttggtgtt 6716638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 44755662 - 44755770
Alignment:
Q  58 ttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggag-cttttcggatgtggctcagct 156  Q
    ||||||||||||||||| ||||||||||  ||| |||||||| |||||||||||||||  |||||||| ||||| |||  |||||||| || ||||| ||    
T  44755662 ttttgggctttttatggtttctttcggtatatcagaggtcgataggtggtggaagctgaatgatcttttggataagagttttttcggaggtagctcaact 44755761  T
Q  157 ttggtgttc 165  Q
    |||||||||    
T  44755762 ttggtgttc 44755770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 34390056 - 34390143
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    |||||||||||||||||||||||||||| ||||||||||| || || ||||  ||||||||||||  |||||||||| ||| ||||||    
T  34390056 tctttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcgattaggagcttttcaaatgtggctcaacttgggtgtt 34390143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 164
Target Start/End: Original strand, 3478418 - 3478531
Alignment:
Q  51 agattggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggc 150  Q
    ||||| |||||||||||| |  |  ||||||||||||||||||| ||||||||||| ||||||||  |||||||||||||  || |||||| ||  ||||    
T  3478418 agattagttttgggctttgttggtgttctttcggtggatcggagatcgagaggtggcggaagctgaatgatctttcggatgtgaacttttctgagttggc 3478517  T
Q  151 tcagctttggtgtt 164  Q
    | ||||||||||||    
T  3478518 taagctttggtgtt 3478531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 23983298 - 23983381
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttg 159  Q
    ||||||||||| ||||||||| |||||||||||  || ||  |||||||||| ||| ||||||||||||| ||| |||||||||    
T  23983298 ttctttcggtgtatcggaggttgagaggtggtgacagttgaatgatctttcgaatatgagcttttcggatctggttcagctttg 23983381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 35745813 - 35745748
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcg 142  Q
    ||||||||||||| |||||| ||||||| ||||||||||| || || ||||| |||||||||||||    
T  35745813 tctttcggtggattggaggtggagaggttgtggaagctgcatgttcattcggttaggagcttttcg 35745748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 36449175 - 36449212
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagc 113  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  36449175 ttctttcggtggatcggaggttgagaggtggtggaagc 36449212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 41089735 - 41089691
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgat 121  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||    
T  41089735 tctttcggtggatcggaggtcgcgaggttgtggaagctgcatgat 41089691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 48162012 - 48161938
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctc 152  Q
    ||||| |||||||| ||||||||||||| ||||||| |||||| || || || || |||||||||| |||||||||    
T  48162012 tcttttggtggatcagaggtcgagaggttgtggaagttgcttgttcattgggtta-gagcttttcgaatgtggctc 48161938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 33435203 - 33435284
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcgga-tgtggctcagctt 157  Q
    |||||||||||||||||||||| ||||| ||| ||||| | ||||| |||||  ||| ||| |||| | |||||||||||||    
T  33435203 tctttcggtggatcggaggtcgcgaggttgtgaaagctacatgatccttcggtcaggtgctcttcgaattgtggctcagctt 33435284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 36778 - 36978
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    |||||||||| |||||||||  |||||||||||||||||||||||||| |||||||||| ||  || |||||||| |||||||||||||  |||||||||    
T  36778 ttggttttggtctttttatgatttctttcggtggatcggaggtcgagatgtggtggaagttgaatggtctttcggttaggagcttttcgattgtggctca 36877  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatggttggctattgtttttacagtggtcgt 253  Q
    |||||||||||| ||| |||  | |||||||||||||||||||||||||| ||||||||||||||| | ||||||||| | | |||||||||||||| ||    
T  36878 gctttggtgttcaggacggg-gggttattttttaggggtgtttttctttgggggtgagtagtgacggtggatggttggatgtcgtttttacagtggtggt 36976  T
Q  254 tt 255  Q
    ||    
T  36977 tt 36978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 25647755 - 25647955
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    |||||||| |||||||||||| |||||| |||||||||||||||||||||||||| ||| ||  ||||||||||| || |||||||||||| ||||||||    
T  25647755 ttggttttaggctttttatggtttcttttggtggatcggaggtcgagaggtggtgaaagttgaatgatctttcggttatgagcttttcggacgtggctca 25647854  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatggttggctattgtttttacagtggtcgt 253  Q
    | ||||||| || ||| | |  | ||||||||||||||||||||| |||| ||||||||||||| ||| ||||||||| ||| |||||| ||||||| ||    
T  25647855 gttttggtgctcaggaagtgggggttattttttaggggtgtttttatttgggggtgagtagtgatgatggatggttggatatcgttttt-cagtggtggt 25647953  T
Q  254 tt 255  Q
    ||    
T  25647954 tt 25647955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 14879505 - 14879708
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||   ||||||||| |||||||||||||||||||||||||     
T  14879505 ttggttttggactttttatggtttctttcggtggataggaggtcgagaggtggtggaagcttaatgatctttcagataggagcttttcggatgtggctcg 14879604  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatg--gttggctattgtttttacagtggtc 251  Q
    | ||||||||||  |   ||  ||||| |||| ||||||||||||||||  |||||| ||||||||||   ||  ||||| ||| |||||| ||||||||    
T  14879605 ggtttggtgttcaagtctgggagtttaattttgaggggtgtttttctttcggggtgaatagtgacgatgtgtggtgttggatatcgttttttcagtggtc 14879704  T
Q  252 gttt 255  Q
    ||||    
T  14879705 gttt 14879708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 37123451 - 37123652
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    ||||||||||||||||||||| ||||||||  ||||||||| |||| |||||||||||||||  ||||||||| || | ||||||||| |||||||||||    
T  37123451 ttggttttgggctttttatggtttctttcga-ggatcggagttcgataggtggtggaagctgtatgatctttcagacatgagcttttc-gatgtggctca 37123548  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatg--gttggctattgtttttacagtggtc 251  Q
    |||||| |||||||||  |   ||||| |||  |||||||||  ||||||  ||||||||||||| |  | ||  ||||| ||| |||||||||||||||    
T  37123549 gctttgatgttctggactgagagtttaatttggaggggtgttcatctttggcggtgagtagtgacaacaggtggtgttggatatcgtttttacagtggtc 37123648  T
Q  252 gttt 255  Q
    ||||    
T  37123649 gttt 37123652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 23328337 - 23328250
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    |||||||||||||||||||||||||||| ||||||||| |||| || ||||| ||||||||||||| |||||||||||||| ||||||    
T  23328337 tctttcggtggatcggaggtcgagaggttgtggaagctccttgttcattcggttaggagcttttcgaatgtggctcagcttgggtgtt 23328250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 251
Target Start/End: Complemental strand, 28937726 - 28937527
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    |||| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||  |||| |||| |  |||||||||| ||||||||||||    
T  28937726 ttggatttgggctttttatggtttctttcggtggatcggaggtcaagagatggtggaagctgaatgatgtttcagggaggagctttttggatgtggctca 28937627  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgttttt--ctttgagggtgagtagtgacgattgatgg--ttggctattgtttttacagtgg 249  Q
     ||||| ||||| ||    |  |||| ||||||||||||||||||  ||| || ||||||||||| |||| | |||  |||| ||| |||||||||||||    
T  28937626 -ctttgatgttcaggtctaggagtttgttttttaggggtgttttttacttgga-ggtgagtagtggcgatgggtggtattggatatcgtttttacagtgg 28937529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 14755276 - 14755166
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    |||| |||||||||||||| | |||||||| |||||||||||||||||| ||||||||| ||  |||||||||||  | |||||| | ||||||||||||    
T  14755276 ttggatttgggctttttattgtttctttcgatggatcggaggtcgagagatggtggaagttgaatgatctttcggggatgagcttgttggatgtggctca 14755177  T
Q  154 gctttggtgtt 164  Q
    |||||||||||    
T  14755176 gctttggtgtt 14755166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 164
Target Start/End: Complemental strand, 39021287 - 39021178
Alignment:
Q  55 tggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatc-tttcggataggagcttttcggatgtggctca 153  Q
    ||||||||||||||| || | |||||| |||||||||||||||||||| |||||| ||||| |||||| ||||||||| ||| ||||||||||||||| |    
T  39021287 tggttttgggctttt-atagattcttttggtggatcggaggtcgagagatggtggtagctgattgatcttttcggatatgagtttttcggatgtggctta 39021189  T
Q  154 gctttggtgtt 164  Q
    |||||||||||    
T  39021188 gctttggtgtt 39021178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 54 - 231
Target Start/End: Original strand, 14194011 - 14194179
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    ||||||||||||||||||||| |||||||||        ||||||||||||| |||||||||  |  |||||||| ||||||||||||||| ||||||||    
T  14194011 ttggttttgggctttttatggtttctttcgg--------aggtcgagaggtg-tggaagctgaattgtctttcggttaggagcttttcggacgtggctca 14194101  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatggttgg 231  Q
    | ||||||  || ||| | |  | |||||||||| |||||||||| |||  ||||||||||||||||| |||||||||    
T  14194102 gttttggttctcaggaagtgggggttattttttaagggtgtttttattttggggtgagtagtgacgatggatggttgg 14194179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 33143956 - 33143845
Alignment:
Q  58 ttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctt 157  Q
    ||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| ||||||| |   ||||||| ||||  | ||||| |||||||    
T  33143956 ttttgggctttttatggtttctttcggtggatcagaggtcgcgaggtggtggaagctgattgatctcttatataggagttttttcgttgtggatcagctt 33143857  T
Q  158 tggtgttctgga 169  Q
    ||||||| ||||    
T  33143856 tggtgttttgga 33143845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 50519008 - 50518903
Alignment:
Q  145 tgtggctcagctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatggttggctattgtttttac 244  Q
    ||||||||||||||||||||| ||| | |   |||||||||||||||||||||||||||  |||||||||||||||| ||| ||| | ||| ||||||||    
T  50519008 tgtggctcagctttggtgttcaggacgaggaatttattttttaggggtgtttttctttggaggtgagtagtgacgatggatcgttagatatcgtttttac 50518909  T
Q  245 agtggt 250  Q
    ||||||    
T  50518908 agtggt 50518903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 255
Target Start/End: Complemental strand, 37999125 - 37998972
Alignment:
Q  100 gaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgttctggatgggccgtttattttttaggggtgtttttc 199  Q
    |||||||||||||||  ||||||||| |||||||||||||| ||| |||| ||| ||||||||||  ||| |||  ||||| |||| | ||||||||||     
T  37999125 gaggtggtggaagctaattgatcttttggataggagctttttggaggtggatcaactttggtgtttaggacgggaagtttaattttaatgggtgtttttt 37999026  T
Q  200 tttgagggtgagtagtgacgattgatggttggctattgtttttacagtggtcgttt 255  Q
    |||    |||||| ||||||||   ||||||| ||| ||||| |||||||||||||    
T  37999025 ttt--ttgtgagtggtgacgatgagtggttggatatcgttttaacagtggtcgttt 37998972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 21342629 - 21342704
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctc 152  Q
    ||||||| |||||| ||||||||||||| |||||||||||||| || ||||| ||| ||||||||| |||||||||    
T  21342629 tctttcgatggatcagaggtcgagaggttgtggaagctgcttgttcattcggttagaagcttttcgaatgtggctc 21342704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 40023559 - 40023480
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagct 156  Q
    |||||||||||||| |||| || ||||| ||||||||||| || || ||||| ||||||||||||| |||||||||||||    
T  40023559 tctttcggtggatcagaggacgggaggttgtggaagctgcatgttcattcggttaggagcttttcgaatgtggctcagct 40023480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 45398890 - 45398977
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    ||||||| |||||||||||||||||||| ||||||||||| || || ||||| || |||||||||| ||||||| || ||| ||||||    
T  45398890 tctttcgatggatcggaggtcgagaggttgtggaagctgcatgttcattcggttatgagcttttcgaatgtggcgcaacttaggtgtt 45398977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 5556640 - 5556711
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatcttt 125  Q
    |||||||||||||||| | |  ||||||||||||| |||||||  |||||||||||| |||| |||||||||    
T  5556640 ttggttttgggcttttcaggtgttctttcggtggaccggaggtttagaggtggtggaggctggttgatcttt 5556711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 4170855 - 4170923
Alignment:
Q  95 gtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    |||| |||||||||||||||   |||||||| || ||||||||||   ||||||||||||||||||||||    
T  4170855 gtcgggaggtggtggaagcttaatgatctttggg-taggagctttggagatgtggctcagctttggtgtt 4170923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 43012469 - 43012557
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcgga-tgtggctcagctttggtgtt 164  Q
    |||||||||| ||| ||||||| ||||| ||||||| ||| ||||| |||||  ||| ||| |||| | ||||||||||||| ||||||    
T  43012469 tctttcggtgaatcagaggtcgcgaggttgtggaagttgcatgatcgttcggtcaggtgctcttcgaaatgtggctcagcttgggtgtt 43012557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 46358376 - 46358328
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctt 124  Q
    ||||||| |||||| |||||| |||||||||||||||||  ||||||||    
T  46358376 ttctttcagtggattggaggttgagaggtggtggaagcttattgatctt 46358328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 54 - 251
Target Start/End: Original strand, 8297537 - 8297738
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    |||||||||| |||||||||| ||||||||||| ||||||||||| ||||||||||||| ||  || ||||||||||||||||||||||||||||||||     
T  8297537 ttggttttggactttttatggtttctttcggtgaatcggaggtcgtgaggtggtggaagttgaatggtctttcggataggagcttttcggatgtggctcg 8297636  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagg----gtgagtagtgacgattgatggttggctattgtttttacagtgg 249  Q
    | ||||||||||  ||||||  ||||| |||| ||||||||||||||||| ||    ||||||||||||||| | |||||||  || ||||||||| |||    
T  8297637 gttttggtgttcatgatggggagtttaattttgaggggtgtttttctttgggggtgagtgagtagtgacgataggtggttggaaatcgtttttacattgg 8297736  T
Q  250 tc 251  Q
    ||    
T  8297737 tc 8297738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 26045976 - 26045810
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    |||||||||| |||||||||| |||| |||| |||||||||||||  |||  |||||||||| |||||||||| |||| |||||||||||| ||| ||||    
T  26045976 ttggttttggactttttatggtttctctcgggggatcggaggtcgttaggctgtggaagctgattgatctttcagatatgagcttttcggaggtgactca 26045877  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgat 221  Q
     ||||||||||  |||| |   ||||| |||| ||||||||||||||||| |||||||||||||||||    
T  26045876 actttggtgtttaggattgagagtttaattttgaggggtgtttttctttg-gggtgagtagtgacgat 26045810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 255
Target Start/End: Complemental strand, 14302442 - 14302254
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||               |||||||    
T  14302442 ttggttttgggctttttatggtttctttcggtggatcggaggtcgagaggtggtggaagctgcatgatctttcggata---------------tggctca 14302358  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatg--gttggctattgtttttacagtggtc 251  Q
    |||||||||||| |||  ||  ||||| |||| |||||| |||||||||| || |||||||||||||  | ||  ||||| ||| ||||||||| |||||    
T  14302357 gctttggtgttcaggagtgggagtttaattttgaggggtatttttctttggggatgagtagtgacgacaggtggtgttggatatcgtttttacattggtc 14302258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 53 - 164
Target Start/End: Complemental strand, 7392049 - 7391938
Alignment:
Q  53 attggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctt-tcggataggagcttttcggatgtggct 151  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| | |||||||| | |||||||||||||||||||||||||    
T  7392049 attggttttgggctttt-atggtttctttcggtggatcggaggtcgagaggtggttgaagcggattgatcttattggataggagcttttcggatgtggct 7391951  T
Q  152 cagctttggtgtt 164  Q
    | ||||| |||||    
T  7391950 ctgctttcgtgtt 7391938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 252
Target Start/End: Complemental strand, 33258894 - 33258693
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||  |||| | || |  |||||||| | ||||||||||||    
T  33258894 ttggatttgggctttttatggtttctttcggtggatcggaggtcgagagatagtggaagctgaatgatttctcagggaggagcttgttggatgtggctca 33258795  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtg-tttttctttgagggtgagtagtgacgattgatgg--ttggctattgtttttacagtggt 250  Q
    |||||||||||| ||    |  |||| |||||  |||||| |||||||||  |||||||||||| |||| |||||  |||| ||| ||||||||||||||    
T  33258794 gctttggtgttcaggtctaggagtttgtttttgtggggtgttttttctttaggggtgagtagtggcgatggatggtattggatatcgtttttacagtggt 33258695  T
Q  251 cg 252  Q
    ||    
T  33258694 cg 33258693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 26405522 - 26405364
Alignment:
Q  89 tcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgttctggatgggccgtttattttttag 188  Q
    |||||| |||||||||||||||||||| ||| ||||||||||| |||||||||||| |||||||  ||||||||||| ||| | |  ||||| |||| |     
T  26405522 tcggagatcgagaggtggtggaagctgattggtctttcggatatgagcttttcggaggtggctcgactttggtgttcaggacgaggagtttaattttgat 26405423  T
Q  189 gggtgtttttctttgagggtgagtagtgacgattgatggttggctattgtttttacagtg 248  Q
    | |||||||||||||| |||||||||||||||| | || |||| ||| ||||| ||||||    
T  26405422 gagtgtttttctttga-ggtgagtagtgacgatgggtgattggatatggttttaacagtg 26405364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 7195239 - 7195145
Alignment:
Q  67 ttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggt 161  Q
    |||||||| || |||||||||||||||||||||||||| ||||||||||  | |||||| ||||||||||||| |||||||||||||||||||||    
T  7195239 ttttatggtttttttcggtggatcggaggtcgagaggtcgtggaagctgaataatcttttggataggagctttgcggatgtggctcagctttggt 7195145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 21402849 - 21402761
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatc-tttcggataggagcttttc 141  Q
    ||||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||||| || |||||| |||||| ||||||||||||    
T  21402849 ttggttttgagctttttatggtttctttcggtggattggaggttgagaggtggtggaagttgattgatcttttcgggtaggagcttttc 21402761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 13954246 - 13954175
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatcttt 125  Q
    ||||||||||||||||||||| |||||||||||||||||| || || ||||||||||| ||| |||||||||    
T  13954246 ttggttttgggctttttatggtttctttcggtggatcggaagttgaaaggtggtggaaactgattgatcttt 13954175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 165
Target Start/End: Original strand, 25992076 - 25992187
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    ||||||||||||||||||||  |||||||| |||||||||||||| ||| || ||||||||   |||||||||||  || ||||||| | | |||||||     
T  25992076 ttggttttgggctttttatgatttctttcgatggatcggaggtcgtgagatgttggaagcttaatgatctttcggggagaagctttttgtaggtggctct 25992175  T
Q  154 gctttggtgttc 165  Q
    ||||||||||||    
T  25992176 gctttggtgttc 25992187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 17854056 - 17853971
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtg 162  Q
    ||||||||||||| | || || ||||||||||||||| ||  |||||||| | ||| || ||||||||||||||||||||| |||||    
T  17854056 ttctttcggtggacctgaagttgagaggtggtggaagttgaatgatctttagaatatga-cttttcggatgtggctcagctatggtg 17853971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 39024453 - 39024397
Alignment:
Q  56 ggttttgggctttttatggc-ttctttcggtggatcggaggtcgagaggtggtggaa 111  Q
    ||||||||| |||||||||  |||||||||||||| ||| || ||||||||||||||    
T  39024453 ggttttgggttttttatggtgttctttcggtggattggaagttgagaggtggtggaa 39024397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 54 - 255
Target Start/End: Original strand, 48098402 - 48098606
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    ||||||||||||||||||| | |||||||| ||||||| |||||||||||||||||||| ||   |||||||| ||||||||||||||||||||||||||    
T  48098402 ttggttttgggctttttatagtttctttcgatggatcgaaggtcgagaggtggtggaagatgaacgatctttcagataggagcttttcggatgtggctca 48098501  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgt-ttttctttgagggtgagtagtgacgattgatggt--tggctattgtttttacagtggt 250  Q
     ||||||||||   ||  ||  ||||||||||||||||||| ||||||||| ||||||||||||||||  | | ||  ||| ||| ||||||||||||||    
T  48098502 actttggtgtttaagactgggagtttattttttaggggtgtattttctttgggggtgagtagtgacgacgggttgtgatggatatcgtttttacagtggt 48098601  T
Q  251 cgttt 255  Q
    |||||    
T  48098602 cgttt 48098606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 56 - 252
Target Start/End: Original strand, 49528143 - 49528339
Alignment:
Q  56 ggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagc 155  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||  ||||||||||||||| |||||| ||||||||| |||||    
T  49528143 ggttttgggctttttatggtttctttcggtggatcggaggtcgggaggtggtggaagatgaatgatctttcggatagaagctttgcggatgtggttcagc 49528242  T
Q  156 tttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatggttggctattgtttttacagtggtcg 252  Q
    ||||||||||  ||  |   ||||  |||| ||||||||||||||  | ||||||||||||| ||| ||||||||  ||| ||||| | ||||||||    
T  49528243 tttggtgttcaagactgagagttttattttgaggggtgtttttctaagggggtgagtagtgaagatggatggttgaatatcgttttaatagtggtcg 49528339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 56 - 245
Target Start/End: Complemental strand, 41117977 - 41117788
Alignment:
Q  56 ggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagc 155  Q
    ||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||  |||||||||| ||||||||||| |||| |||||||||     
T  41117977 ggttttgggctttttatggtttctttcgatggatcagaggtcgagaggtggtggaagctgaatgatctttcgaataggagctttgcggaggtggctcagg 41117878  T
Q  156 tttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatggttggctattgtttttaca 245  Q
    ||||||||||  ||| ||  ||||  || | ||||||||||||||    ||||||||| ||||||| | ||||||| ||| |||||||||    
T  41117877 tttggtgttcatgatcgggagttttattctgaggggtgtttttctaaaggggtgagtaatgacgatgggtggttggatatcgtttttaca 41117788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 58 - 221
Target Start/End: Original strand, 25753245 - 25753408
Alignment:
Q  58 ttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctt 157  Q
    ||||||||||||||| | |||||||||||||||||||||||| |||  ||||||||||  |||||||||||| || ||||||| |||||||| ||| |||    
T  25753245 ttttgggctttttattgtttctttcggtggatcggaggtcgataggcagtggaagctgaatgatctttcggagagaagctttttggatgtggttcaactt 25753344  T
Q  158 tggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgat 221  Q
    || ||||| |||  |   ||||| |||| ||||||||||||||||| |||||||||||||||||    
T  25753345 tgatgttcaggactgaaagtttaattttgaggggtgtttttctttgggggtgagtagtgacgat 25753408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 255
Target Start/End: Complemental strand, 38637243 - 38637044
Alignment:
Q  56 ggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagc 155  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||  ||||||||| |||| ||||||| | || | || ||| |    
T  38637243 ggttttgggctttttatggtttcttttggtggatcggaggtcgagaggtggtggaagctgaatgatctttcagataagagctttgccgaggcggttcaac 38637144  T
Q  156 tttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatggttggctattgtttttacagtggtcgttt 255  Q
    ||||||||||  ||| ||  ||||   | | ||||||||||||||  | ||||||||||||||||| | ||||||| |||  ||||||||| ||| ||||    
T  38637143 tttggtgttcaagattgggagttttagtataaggggtgtttttctaagggggtgagtagtgacgatgggtggttggatatcatttttacagcggttgttt 38637044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 53823433 - 53823322
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatc-tttcggataggagcttttcggatgtggctc 152  Q
    ||||||||||| ||||||||| |||||||||| ||||| |||||||||||||||||||| || |||||| ||| |||||||||||||| |||||||||||    
T  53823433 ttggttttgggttttttatggtttctttcggttgatcgaaggtcgagaggtggtggaagttgattgatctttttggataggagcttttaggatgtggctc 53823334  T
Q  153 agctttggtgtt 164  Q
    ||||||||||||    
T  53823333 agctttggtgtt 53823322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 252
Target Start/End: Complemental strand, 22811172 - 22810974
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    |||||||| |||||||||||| |||| ||| ||||| |||||| ||||||||||||||| ||     ||||  || |||||| ||| |||||||||||||    
T  22811172 ttggttttaggctttttatggtttctctcgatggattggaggttgagaggtggtggaagttgaaatgtcttctggttaggagttttgcggatgtggctca 22811073  T
Q  154 gctttggtgttctggatgg-gccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatggttggctattgtttttacagtggtcg 252  Q
    |||||||||||| ||| || |   ||||| |||||| ||| |||||||||| ||||||||||||||||| |||||| || ||| ||||||||||||||||    
T  22811072 gctttggtgttcaggacggagggttttatcttttagaggt-tttttctttgggggtgagtagtgacgatggatggtaggatatcgtttttacagtggtcg 22810974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 39421025 - 39420915
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    ||||||||||||||||||||| || |||||||||||||||| |||||||||||||||| ||| ||||| |||| ||||||||||||||  |||||||| |    
T  39421025 ttggttttgggctttttatggtttttttcggtggatcggagatcgagaggtggtggaaactgattgatatttcagataggagcttttcaaatgtggctta 39420926  T
Q  154 gctttggtgtt 164  Q
    |||| ||||||    
T  39420925 gcttcggtgtt 39420915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 220
Target Start/End: Complemental strand, 16833033 - 16832867
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    |||| |||||||||||||||| ||||||| |||| ||||| ||| ||||||| | |||||||  |||||||| ||||| |||||||||||||||||||||    
T  16833033 ttggatttgggctttttatggtttctttcagtggttcggaagtcaagaggtgattgaagctgaatgatctttgggatatgagcttttcggatgtggctca 16832934  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtg-tttttctttgagggtgagtagtgacga 220  Q
     |||||||||||  ||  |   ||||| |||| ||||||| |||||||||| ||||||||||||||||    
T  16832933 actttggtgttcaagactgtgagtttaattttgaggggtgttttttctttg-gggtgagtagtgacga 16832867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 19815210 - 19815122
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    ||||||||||||| ||||||||||||| |||||||||||   ||||||||||||||||| |||||| ||||||||| | ||||||||||    
T  19815210 ttctttcggtggaccggaggtcgagagatggtggaagctaaatgatctttcggataggaacttttccgatgtggctaaactttggtgtt 19815122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 31050648 - 31050561
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    |||||| ||||||||||||||||||||| ||||||||||| || || ||||| |||||||||||||  ||||||| ||||| ||||||    
T  31050648 tctttcagtggatcggaggtcgagaggttgtggaagctgcatgttcattcggttaggagcttttcgattgtggctaagcttgggtgtt 31050561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 2061746 - 2061678
Alignment:
Q  58 ttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttc 126  Q
    |||||||||||| |||  ||||||||||||||||||||||||||||||||||||| ||  |||||||||    
T  2061746 ttttgggcttttgatgatttctttcggtggatcggaggtcgagaggtggtggaagttgaatgatctttc 2061678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 2825877 - 2825964
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    ||||||||||||||||||||| |||||| ||||||||||| || || ||||| ||||||||||||| | |||| |||| || ||||||    
T  2825877 tctttcggtggatcggaggtctagaggttgtggaagctgcatgttcattcggttaggagcttttcgaaggtggttcagtttgggtgtt 2825964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 35341325 - 35341239
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    |||||||||||||||||| ||||||||| ||||||||||| || || ||| | || |||||||||| ||||||||||| |||||||||    
T  35341325 tctttcggtggatcggagttcgagaggttgtggaagctgcatgttcattcagttatgagcttttcgaatgtggctcag-tttggtgtt 35341239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 251
Target Start/End: Original strand, 19673191 - 19673365
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgttctggatgggcc 175  Q
    ||||||||||||||||  |||||| || |||||||||||   |||| ||| ||||| || |||||||||||||||| | ||||||||||  |||  |       
T  19673191 ttctttcggtggatcgacggtcgatagatggtggaagctaaatgatattttggatatgaacttttcggatgtggctaaactttggtgttgaggactgaga 19673290  T
Q  176 gtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatg--gttggctattgtttttacagtggtc 251  Q
    ||||| |||| ||| |||   ||||||| ||||||||||||||||  ||||  ||||| ||||| |||||||||||||    
T  19673291 gtttaattttgaggagtg---ttctttgggggtgagtagtgacgacggatggtgttggatattgcttttacagtggtc 19673365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 164
Target Start/End: Complemental strand, 19311353 - 19311276
Alignment:
Q  87 gatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    |||||| ||||||||||||||||||||||  |||||||| || || |||||||| | |||||| || |||||||||||    
T  19311353 gatcgggggtcgagaggtggtggaagctgtatgatcttttggttaagagctttttgaatgtggttcggctttggtgtt 19311276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 49747596 - 49747706
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagagg-tggtggaagctgcttgatctttcggataggagcttttcggatgtggctc 152  Q
    ||||||||| ||||||||||| ||||||| |||||||| |||| || ||| ||||| | | ||  |||||||||  ||| ||||||||||||  |||||     
T  49747596 ttggttttgagctttttatgggttctttctgtggatcgaaggttgataggttggtgtaggttgaatgatctttcatatatgagcttttcggagatggctt 49747695  T
Q  153 agctttggtgt 163  Q
    |||||||||||    
T  49747696 agctttggtgt 49747706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 43374084 - 43374035
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatcttt 125  Q
    ||||||| ||||||||||||| | | |||||||||||||| |||||||||    
T  43374084 ttctttcagtggatcggaggttgcgcggtggtggaagctgattgatcttt 43374035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 54 - 221
Target Start/End: Complemental strand, 20701815 - 20701647
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  20701815 ttggttttgggctttttatggtttctttcggtggatcggaggtcgagaggtagtggaagctgaatgatctttcggataggagcttttcgaatgtggctca 20701716  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtg-tttttctttgagggtgagtagtgacgat 221  Q
     ||||| |||||  ||   |  |||| ||||| | ||||| ||||| |||| |||||||||||||||||    
T  20701715 actttgttgttcaagactaggagtttgtttttaaagggtgttttttttttgggggtgagtagtgacgat 20701647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 54 - 255
Target Start/End: Complemental strand, 3880610 - 3880406
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    ||||||||| | ||||||||| ||||||| ||||||||||||||||| ||||||||||| ||  | |||||||||||| |||||||| ||||||||||||    
T  3880610 ttggttttgagatttttatggtttctttccgtggatcggaggtcgagtggtggtggaagttgaataatctttcggatatgagctttttggatgtggctca 3880511  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtg-tttttctttgagggtgagtagtgacgattgatg--gttggctattgtttttacagtggt 250  Q
    ||||||||||||  ||   |  ||||| |||| ||||||| |||||||| | ||||||||||||||||  ||||  ||||| ||| ||||||| ||||||    
T  3880510 gctttggtgttcaagacttggagtttaattttgaggggtgttttttcttagggggtgagtagtgacgacagatggtgttggatatcgtttttatagtggt 3880411  T
Q  251 cgttt 255  Q
    |||||    
T  3880410 cgttt 3880406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 228
Target Start/End: Complemental strand, 15120606 - 15120437
Alignment:
Q  57 gttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatc-tttcggataggagcttttcggatgtggctcagc 155  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||| |||  ||||  || |||||||| ||||||   |    
T  15120606 gttttgggctttttatggtttcttttggtggatcggaggtcgagaggtggtggaagctggttgatctttttagatattagattttcggacgtggctttac 15120507  T
Q  156 tttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatggt 228  Q
    |||||||||  |||  |   ||||| ||||||||| |||||    ||||||||||||||||||||| ||||||    
T  15120506 tttggtgttgaggactgcgggtttaatttttagggatgttt---cttgagggtgagtagtgacgatggatggt 15120437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 125
Target Start/End: Original strand, 13423535 - 13423606
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatcttt 125  Q
    |||||| |||||||| ||||| |||||||| |||| |||||| || |||||||||||||||| |||||||||    
T  13423535 ttggttatgggctttatatggtttctttcgatggaccggaggccgcgaggtggtggaagctgattgatcttt 13423606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 32935329 - 32935243
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtg 162  Q
    |||||||||||| ||  |||| | ||||||||||||||||| |||||||||| | | ||| |||||||||||  |||||||||||||    
T  32935329 ttctttcggtggttcaaaggttgggaggtggtggaagctgcatgatctttcgaacatgagtttttcggatgtaactcagctttggtg 32935243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 164
Target Start/End: Original strand, 13423603 - 13423631
Alignment:
Q  136 cttttcggatgtggctcagctttggtgtt 164  Q
    |||||||||||||||||||||||||||||    
T  13423603 cttttcggatgtggctcagctttggtgtt 13423631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 26534728 - 26534656
Alignment:
Q  54 ttggttttgggctttttatggc-ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatcttt 125  Q
    |||||||||||||||||  ||  ||||||||||||| || |||| | | |||||||||||||| |||||||||    
T  26534728 ttggttttgggcttttttaggtgttctttcggtggaccgaaggttgtgcggtggtggaagctgattgatcttt 26534656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 54 - 220
Target Start/End: Original strand, 58196 - 58362
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||| || |||||||||  | |||||||||||| |||||||||| ||||||||||    
T  58196 ttggttttaggctttttatggtttctttcggtggatcggaggtcgagagatgatggaagctgaattatctttcggataagagcttttcgaatgtggctca 58295  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacga 220  Q
    |||||||||||| |||  |   ||||| |||| ||| ||||| ||||||| | ||||||||||||||    
T  58296 gctttggtgttcgggactgagagtttaattttgaggagtgttgttctttgggtgtgagtagtgacga 58362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 17657014 - 17656872
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    |||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||  |||||||||  ||||||||||||| || ||||||||    
T  17657014 ttggttttggactttttatggtttctttcggtggatcggaggtcgataggtggtggaagctgaatgatctttcatataggagcttttcagaggtggctca 17656915  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgttt 196  Q
     |||||||||||  ||| ||  ||||| |||| ||||||||||    
T  17656914 actttggtgttcatgattgggagtttaattttgaggggtgttt 17656872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 8862614 - 8862505
Alignment:
Q  54 ttggttttgggcttttt-atggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctc 152  Q
    ||||||||||| ||||| |||| ||||||| || |||||||  | ||  | ||||||||||||  |||||||||||||| || |||||| ||||||||||    
T  8862614 ttggttttgggtttttttatggtttctttcagtagatcggaaattgaaggatggtggaagctgaatgatctttcggatatgaacttttcagatgtggctc 8862515  T
Q  153 agctttggtg 162  Q
    ||||||||||    
T  8862514 agctttggtg 8862505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 12198058 - 12197986
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtg 148  Q
    |||||||  ||||||||||||||||||||| |||||| |   |||||||||||||| ||||||||||||||||    
T  12198058 ttctttcaatggatcggaggtcgagaggtgatggaagttcaatgatctttcggatatgagcttttcggatgtg 12197986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 12442486 - 12442414
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtg 148  Q
    |||||||  ||||||||||||||||||||| |||||| |   |||||||||||||| ||||||||||||||||    
T  12442486 ttctttcaatggatcggaggtcgagaggtgatggaagttcaatgatctttcggatatgagcttttcggatgtg 12442414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 10248565 - 10248494
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatcttt 125  Q
    ||||||||  ||||| ||||| |||||| ||||||||||||| || |||||||||||||||| |||||||||    
T  10248565 ttggttttttgctttatatggtttcttttggtggatcggaggccgcgaggtggtggaagctgattgatcttt 10248494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 15821366 - 15821287
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagct 156  Q
    |||||| ||||||| ||||||||||||| |||||| |  |||| || || || ||||||||||||| |||||||||||||    
T  15821366 tctttcagtggatcagaggtcgagaggttgtggaaacaacttgttcatttggttaggagcttttcgaatgtggctcagct 15821287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 38577777 - 38577690
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    |||||||||||||| ||||||||||| | ||||||||||| || || ||||| | ||||||||||| || |||| || ||| ||||||    
T  38577777 tctttcggtggatcagaggtcgagagtttgtggaagctgcatgttcattcggtttggagcttttcgaatatggcgcaacttgggtgtt 38577690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 35816230 - 35816153
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcag 154  Q
    ||||| |||||||||||||| ||||| | ||||||||||| || || ||||| || ||| |||||| |||||||||||    
T  35816230 tcttttggtggatcggaggttgagagattgtggaagctgcatgttcattcggttaagagtttttcgaatgtggctcag 35816153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 125
Target Start/End: Original strand, 35062521 - 35062597
Alignment:
Q  49 ctagattggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatcttt 125  Q
    |||| |||||||||||||||||| |  ||| ||||||||||| ||||| | | ||||||||||| ||  ||||||||    
T  35062521 ctagtttggttttgggctttttaggtgttccttcggtggatcagaggttgcgcggtggtggaaggtgaatgatcttt 35062597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 19452 - 19563
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatc-tttcggataggagcttttcggatgtggctc 152  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||  | ||| ||||||| |||||||||||| |||||||||    
T  19452 ttggttttgggctttttatggtttctttcggtggatcggaggtcgagagttggtggaagctgaataatcttttcggacaggagcttttcgaatgtggctc 19551  T
Q  153 agctttggtgtt 164  Q
     |||||||||||    
T  19552 tgctttggtgtt 19563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 255
Target Start/End: Original strand, 7696034 - 7696232
Alignment:
Q  56 ggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagc 155  Q
    |||||||||||||| | || |||||||||||||||| |||||| ||||||||||||||||  |||||||||||||||||| |||  |||||||||||| |    
T  7696034 ggttttgggctttt-acggtttctttcggtggatcgaaggtcgggaggtggtggaagctgaatgatctttcggataggagatttgaggatgtggctcaac 7696132  T
Q  156 tttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatggttggctattgtttttacagtggtcgttt 255  Q
    |||||||||| |||   |  ||||  |||||||||||||||||||  | | |||||||||||||||   ||||||  |||  |||||||| |||||||||    
T  7696133 tttggtgttcaggaccaggagttttatttttaggggtgtttttctaagggagtgagtagtgacgatgagtggttgaatatcatttttacattggtcgttt 7696232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 41086809 - 41086715
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtg 148  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||| |||||||    
T  41086809 ttggttttgggctttttatggttcctttcggtggatcggaggtcgagaggtggtggaagctgaatgatctttcggataagagctttttggatgtg 41086715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 1269552 - 1269663
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatc-tttcggataggagcttttcggatgtggctc 152  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||  | ||| |||||||||||||||||||| |||||||||    
T  1269552 ttggttttgggatttttatggtttctttcagtggatcggaggtcgagagttggtggaagctgaataatcttttcggataggagcttttcgaatgtggctc 1269651  T
Q  153 agctttggtgtt 164  Q
     |||||||||||    
T  1269652 tgctttggtgtt 1269663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 34230274 - 34230380
Alignment:
Q  58 ttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctt 157  Q
    ||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||  |||||||||  ||| ||||||||| ||||||||||| |||    
T  34230274 ttttgggctttttgtggtttctttcggtggatcggaggttgagaggtggtggaagctgaatgatctttcaaataagagcttttcagatgtggctcaactt 34230373  T
Q  158 tggtgtt 164  Q
    |||||||    
T  34230374 tggtgtt 34230380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 220
Target Start/End: Complemental strand, 37770653 - 37770488
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctca 153  Q
    |||||||||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||  ||||||||| |||| ||||||||| || |||||||     
T  37770653 ttggttttgggctttt-atggtttctttcggtgaatcggaggtcgagaggtgttggaagctgaatgatctttcagatatgagcttttctgaggtggctcg 37770555  T
Q  154 gctttggtgttctggatgggccgtttattttttaggggtgtttttctttgagggtgagtagtgacga 220  Q
    |||||||||||| ||   |   ||||| |||| |||||  |||||||||| ||| ||||||||||||    
T  37770554 gctttggtgttcaggtctgtgagtttaattttgagggggttttttctttgggggcgagtagtgacga 37770488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 10173590 - 10173479
Alignment:
Q  54 ttggttttgggctttttatggc-ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctc 152  Q
    ||||||||||||||||  |||  ||||||||||| ||||||||||||||||||||||||| ||  |||||||| | ||| ||||||||||||||||||||    
T  10173590 ttggttttgggcttttgttggtgttctttcggtgaatcggaggtcgagaggtggtggaagttgaatgatcttttgaatatgagcttttcggatgtggctc 10173491  T
Q  153 agctttggtgtt 164  Q
    ||||||||||||    
T  10173490 agctttggtgtt 10173479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 16952372 - 16952284
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    ||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  16952372 ttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgtt 16952284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 17023037 - 17022949
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    ||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  17023037 ttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgtt 17022949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 17060343 - 17060255
Alignment:
Q  76 ttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    ||||||||||||||||||||| |||||||||||||||||    ||||||||||||||||||||||||||||||| ||| ||||||||||    
T  17060343 ttctttcggtggatcggaggttgagaggtggtggaagctaaacgatctttcggataggagcttttcggatgtggatcaactttggtgtt 17060255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 5254352 - 5254437
Alignment:
Q  79 tttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    |||||||||||||||||||||||||| ||||||||||| || || ||||| | ||||||||||| ||||||||||| || ||||||    
T  5254352 tttcggtggatcggaggtcgagaggttgtggaagctgcatgttcattcggtttggagcttttcgaatgtggctcagtttgggtgtt 5254437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 7874388 - 7874472
Alignment:
Q  80 ttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    ||||||||||||||||||||||||| |||||| || |||| || || || ||||||||||||| |||||||||||||| ||||||    
T  7874388 ttcggtggatcggaggtcgagaggttgtggaaactacttgttcatttggttaggagcttttcgaatgtggctcagcttgggtgtt 7874472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 13337345 - 13337427
Alignment:
Q  56 ggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagctt 138  Q
    |||||||| |||||||||| |||||||||||||| |||||||||||||||||| |  |||  ||||||||| |||||||||||    
T  13337345 ggttttggactttttatggtttctttcggtggataggaggtcgagaggtggtgaacactgaatgatctttcagataggagctt 13337427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 14106509 - 14106422
Alignment:
Q  77 tctttcggtggatcggaggtcgagaggtggtggaagctgcttgatctttcggataggagcttttcggatgtggctcagctttggtgtt 164  Q
    |||||||||||||| ||||||||||||| ||||||| ||  ||||| ||||| || ||||||| || |||||||||||||| ||||||    
T  14106509 tctttcggtggatcagaggtcgagaggttgtggaagttgtatgatcattcggttaagagctttacgaatgtggctcagcttgggtgtt 14106422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 255
Target Start/End: Original strand, 12343011 - 12343088
Alignment:
Q  176 gtttattttttaggggtgtttttctttgagggtgagtagtgacgattgatggttggctattgtttttacagtggtcgttt 255  Q
    |||||||||| ||||||||||  ||| | |||||||||||||||||   ||||||| ||| |||||||||| ||||||||    
T  12343011 gtttatttttgaggggtgttt--cttggggggtgagtagtgacgatgagtggttggatatcgtttttacagaggtcgttt 12343088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 42150 - 42039
Alignment:
Q  54 ttggttttgggctttttatggcttctttcggtggatcggaggtcgagaggtggtggaagctgcttgatc-tttcggataggagcttttcggatgtggctc 152  Q
    ||||||||||| ||||||||| ||||||| ||||||||||||||||||| ||||||||||||  | ||| |||||||||||||||||||| |||||||||    
T  42150 ttggttttgggatttttatggtttctttcagtggatcggaggtcgagagttggtggaagctgaataatcttttcggataggagcttttcgaatgtggctc 42051  T
Q  153 agctttggtgtt 164  Q
     |||||||||||    
T  42050 tgctttggtgtt 42039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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