View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19708_low_2 (Length: 785)

Name: NF19708_low_2
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19708_low_2
NF19708_low_2
[»] chr4 (2 HSPs)
chr4 (13-601)||(55980013-55980608)
chr4 (593-779)||(55978259-55978445)
[»] chr5 (2 HSPs)
chr5 (13-772)||(14865939-14866698)
chr5 (425-532)||(14248765-14248872)
[»] chr8 (5 HSPs)
chr8 (188-396)||(27065515-27065723)
chr8 (551-675)||(27079595-27079719)
chr8 (554-652)||(27065881-27065979)
chr8 (257-383)||(27053142-27053268)
chr8 (13-225)||(27079057-27079269)


Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 13 - 601
Target Start/End: Complemental strand, 55980608 - 55980013
Alignment:
Q  13 attctcaacaatccagtgacatacctcaatttgtcccggacccgacccaagagacacaaaagcaccatgagtaggactccaatctgatgtatccaaatga 112  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55980608 attctcaaaaatccagtgacatacctcaatttgtcccggacccgacccaagagacacaaaagcaccatgagtaggactccaatctgatgtatccaaatga 55980509  T
Q  113 caaacagcaacaccttgattaattttatccttagttttcgggtcaagtagctctgcttgataaaccctaaccttaggaaccgagtgacaataataaagca 212  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55980508 caaacagcaacaccttgattaattttatccttaattttcgggtcaagtagctctgcttgataaaccctaaccttaggaaccgagtgacaataataaagca 55980409  T
Q  213 aatacggaaacaagctctgatgacacgaaacagttcgggtcactttcccacc---attaatcccactaacatgacccaccataacatccttcttcgaccc 309  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||| |||||   ||||||||||||||||||||||||||||| |||||||||||||||    
T  55980408 aatactgaaacaagctctgatgacacgaaacagttcgggtcatttttccaccattattaatcccactaacatgacccaccataagatccttcttcgaccc 55980309  T
Q  310 atttacattctcagtagtccgaactacaacatttcgacccaaaaccgaagctgcaaagtcgatcatatcctcaatagaccccacacannnnnnngtctca 409  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  55980308 atttacattctcagtagtccgaaccacaacatttcgacccaaaaccgaagctgcaaagtcgatcatatcctcaatagaccccacacatttttttgtctca 55980209  T
Q  410 cctctagcaggaactctctcacattcacccaatgaatctctcatcatcttttccattgaaccattatccgaagcattaaata----accccttcatctca 505  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    ||||||||||||||    
T  55980208 cctctagcaggaactctctcacattcacccaatgaatctctcatcatcttttccattgaatcattatccgaagcattaaataacccaccccttcatctca 55980109  T
Q  506 tcaatctttgaagtagaaaaaggtaatttcgcaagaatactccggggtaaaaacgaccttttaggtaatttatctctgatatcaggcataggcatt 601  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55980108 tcaatctttgaagtagaaaaaggtaatttcgcaagaatactctggggtaaaaacgaccttttaggtaatttatctctgatatcaggcataggcatt 55980013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 593 - 779
Target Start/End: Complemental strand, 55978445 - 55978259
Alignment:
Q  593 ataggcattactaccccttctttcaacatgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctttttca 692  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55978445 ataggcattactaccacttctttcaacatgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctttttca 55978346  T
Q  693 tttccatagaagcacttaaactcaaactcgcgtttgtgtactttgtaaaagaaataccttctttagaatactctttgaaagtgttgt 779  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  55978345 tttccatagaagcatttaaactcaaactcgcgtttgtgtactttgcaaaagaaacaccttctttagaatactctttgaaagtgttgt 55978259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 13 - 772
Target Start/End: Complemental strand, 14866698 - 14865939
Alignment:
Q  13 attctcaacaatccagtgacatacctcaatttgtcccggacccgacccaagagacacaaaagcaccatgagtaggactccaatctgatgtatccaaatga 112  Q
    |||||||| |||||| ||||| ||||||||  | |||||||||||||||||||||| ||||||||||||||| ||||||||||| || ||||||||||||    
T  14866698 attctcaaaaatccaatgacaaacctcaatccgacccggacccgacccaagagacataaaagcaccatgagttggactccaatcagaagtatccaaatga 14866599  T
Q  113 caaacagcaacaccttgattaattttatccttagttttcgggtcaagtagctctgcttgataaaccctaaccttaggaaccgagtgacaataataaagca 212  Q
    ||||||||||| |||||||| || ||||| ||| | ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  14866598 caaacagcaaccccttgattgatcttatctttactcttcgggtcaagtagctccgcttgataaacccgaaccttaggaaccgagtgacaataataaagca 14866499  T
Q  213 aatacggaaacaagctctgatgacacgaaacagttcgggtcactttcccaccattaatcccactaacatgacccaccataacatccttcttcgacccatt 312  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||||| |||||||||||| ||||  |||||||||||||||||||||||||||||||    
T  14866498 aatacggaaacaaactctgatgacacgaaacagaccgggtcactttcccgccattaatcccattaacccgacccaccataacatccttcttcgacccatt 14866399  T
Q  313 tacattctcagtagtccgaactacaacatttcgacccaaaaccgaagctgcaaagtcgatcatatcctcaatagaccccacacannnnnnngtctcacct 412  Q
    ||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||       |||||||||    
T  14866398 tacattctcagtagtccgaaccaccacatttcgacccaaaaccgaagttgcaaagtcgatcatatcctcaatagacccaacacatctttttgtctcacct 14866299  T
Q  413 ctagcaggaactctctcacattcacccaatgaatctctcatcatcttttccattgaaccattatccgaagcattaaataaccccttcatctcatcaatct 512  Q
     |||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||    
T  14866298 ttagccggaactctctcacaatcacccaatgaatccctcatcatcttttccattgaaccattatccgaagccttgaatagccccttcatctcatcaatct 14866199  T
Q  513 ttgaagtagaaaaaggtaatttcgcaagaatactccggggtaaaaacgaccttttaggtaatttatctctgatatcaggcataggcattactaccccttc 612  Q
    | || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    |||||    
T  14866198 tggatgtagaaaacggtaatttcgcaagaatactccggggtaaaaacgaccttttaggtaatttatctctaatatcaggcataggcattaccgtaccttc 14866099  T
Q  613 tttcaacatgttttcccgaaaaaacttacccggttcaaccgatgttttgaccaaactaccactcaccgtgctctttttcatttccatagaagcacttaaa 712  Q
    ||||||||| || || | |||||||||||| || |||||| || |||| ||||||||||||||| | |   | || |||| || || |||||||||||||    
T  14866098 tttcaacattttctctctaaaaaacttaccaggctcaacccatttttttaccaaactaccactcgcagcatttttgttcactttcacagaagcacttaaa 14865999  T
Q  713 ctcaaactcgcgtttgtgtactttgtaaaagaaataccttctttagaatactctttgaaa 772  Q
    ||| ||||| ||||||||||||||| |||||||| |||||| || |||||||||||||||    
T  14865998 ctcgaactcacgtttgtgtactttgcaaaagaaacaccttccttcgaatactctttgaaa 14865939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 425 - 532
Target Start/End: Complemental strand, 14248872 - 14248765
Alignment:
Q  425 ctctcacattcacccaatgaatctctcatcatcttttccattgaaccattatccgaagcattaaataaccccttcatctcatcaatctttgaagtagaaa 524  Q
    |||||||| || || | |||| |||||||||| || ||||||| ||||| |||| || |  | |||||||  ||||| ||||||||||||||| ||||||    
T  14248872 ctctcacactctcctagtgaacctctcatcattttctccattggaccataatccaaaaccatgaataaccatttcatttcatcaatctttgaactagaaa 14248773  T
Q  525 aaggtaat 532  Q
    | ||||||    
T  14248772 acggtaat 14248765  T

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Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 188 - 396
Target Start/End: Original strand, 27065515 - 27065723
Alignment:
Q  188 ggaaccgagtgacaataataaagcaaatacggaaacaagctctgatgacacgaaacagttcgggtcactttcccaccattaatcccactaacatgaccca 287  Q
    |||||||||||||| || || | |||||| |||||||| ||||| |||||||| |||| |   || ||||| |||||||| |||||  |||| | |||||    
T  27065515 ggaaccgagtgacagtagtataacaaataaggaaacaaactctggtgacacgatacagattcagtaacttttccaccatttatccccttaactttaccca 27065614  T
Q  288 ccataacatccttcttcgacccatttacattctcagtagtccgaactacaacatttcgacccaaaaccgaagctgcaaagtcgatcatatcctcaataga 387  Q
    |||| ||||||||   || |||||||||||||||||| | ||||||   |||| |  |||||||||| |||| |||||| || ||||||||||||| |||    
T  27065615 ccatgacatccttgcccgccccatttacattctcagtggaccgaacagtaacactgtgacccaaaacagaagttgcaaaatcaatcatatcctcaagaga 27065714  T
Q  388 ccccacaca 396  Q
     ||||||||    
T  27065715 acccacaca 27065723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 551 - 675
Target Start/End: Original strand, 27079595 - 27079719
Alignment:
Q  551 ggtaaaaacgaccttttaggtaatttatctctgatatcaggcataggcattactaccccttctttcaacatgttttcccgaaaaaacttacccggttcaa 650  Q
    |||||||||||||||   |||||||||||  | ||||| ||||||||||| || ||||||| ||||||||| ||||| || ||||||||||| |||| ||    
T  27079595 ggtaaaaacgaccttggcggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttctcggaaaaacttaccaggttgaa 27079694  T
Q  651 ccgatgttttgaccaaactaccact 675  Q
    || || ||||  |||||||| ||||    
T  27079695 cccatttttttgccaaactaacact 27079719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 554 - 652
Target Start/End: Original strand, 27065881 - 27065979
Alignment:
Q  554 aaaaacgaccttttaggtaatttatctctgatatcaggcataggcattactaccccttctttcaacatgttttcccgaaaaaacttacccggttcaacc 652  Q
    ||||||||||||   ||||||||||| || ||||| ||||||||||| |||  |||||| |||||||| || ||||| ||||||||||| |||| ||||    
T  27065881 aaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggttgaacc 27065979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 257 - 383
Target Start/End: Original strand, 27053142 - 27053268
Alignment:
Q  257 ttcccaccattaatcccactaacatgacccaccataacatccttcttcgacccatttacattctcagtagtccgaactacaacatttcgacccaaaaccg 356  Q
    ||||||||||| ||| |  | || ||||| ||||||||||  || ||||||||||||||||||||||| | ||||||    ||||| | ||||||||  |    
T  27053142 ttcccaccatttatctcctttacttgacctaccataacattgttgttcgacccatttacattctcagtggaccgaaccgtcacattgctacccaaaatag 27053241  T
Q  357 aagctgcaaagtcgatcatatcctcaa 383  Q
    ||| ||||||||| ||||| |||||||    
T  27053242 aagttgcaaagtcaatcatgtcctcaa 27053268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 27079057 - 27079269
Alignment:
Q  13 attctcaacaatccagtgacatacctcaatttgtcccggacccgacccaagagacacaaaagcaccatgagtaggactccaatctgatgtatccaaatga 112  Q
    ||||||||  ||||| ||||| || ||||| |  |||||||| |||||||||| ||  || ||||| || || || |||||| | | |||||| || |||    
T  27079057 attctcaaagatccaatgacacacttcaatcttacccggaccagacccaagagccatgaatgcaccgtgtgttgggctccaagcagttgtatctaagtga 27079156  T
Q  113 caaacagcaacaccttgattaattttatccttagttttcgggtcaagtagctctgcttgataaaccctaaccttaggaaccgagtgacaataataaagca 212  Q
    |||| ||||||||| ||||| || ||  ||||||  |  || || |  || ||||||| |||||| | |||||| ||||||||||| ||||| || ||||    
T  27079157 caaatagcaacaccatgatttatcttcaccttagactcaggatctaaaagatctgcttcataaacacgaacctttggaaccgagtggcaatagtatagca 27079256  T
Q  213 aatacggaaacaa 225  Q
    |||| ||||||||    
T  27079257 aataaggaaacaa 27079269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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