View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19708_low_20 (Length: 250)
Name: NF19708_low_20
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19708_low_20 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 52245318 - 52245561
Alignment:
| Q |
12 |
aagaatactaatcaattaagctcaaccacgaaatttgtggcacaataaacagtgacatgatatttgtgttgaaagacatat----atgcatataaatatt |
107 |
Q |
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| T |
52245318 |
aagaatactaatcaattaagctcaaccacgaaatttgtggcacaataaacagtgacatgatatttgtgttgaaagacatatatatatgcatataaatatt |
52245417 |
T |
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| Q |
108 |
caaaaagtagtttttacaatcaaatcaatatcatttacttgcgaactcaagttattccaaagatatagaacaagagacttggtcatttccctcc-nnnnn |
206 |
Q |
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| T |
52245418 |
caaaaagtagtttttacaatcaaatcaatatcatttacttgcgaactcaagttattccaaagatatagaacaagagacttggtcatttccctccaaaaaa |
52245517 |
T |
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| Q |
207 |
nngagagttggtaattgatttaccagtcccaaaagcaaaacaaa |
250 |
Q |
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| T |
52245518 |
aagagagttggtaattgatttaccagtcccaaaagcaaaacaaa |
52245561 |
T |
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