View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19708_low_21 (Length: 243)
Name: NF19708_low_21
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19708_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 11654785 - 11654836
Alignment:
| Q |
177 |
atcaactaacagcccttctacatcacataacccatcgccgtcttcatcatct |
228 |
Q |
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| T |
11654785 |
atcaactaacagcccttctacatcacataacccaccaccgtcttcatcatct |
11654836 |
T |
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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 11668553 - 11668604
Alignment:
| Q |
177 |
atcaactaacagcccttctacatcacataacccatcgccgtcttcatcatct |
228 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
11668553 |
atcaactaacagcccttctacatcacataacccaccaccgtcttcatcatct |
11668604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 11654648 - 11654680
Alignment:
| Q |
40 |
cctcaaagcccttctacaccacacagctcacca |
72 |
Q |
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| T |
11654648 |
cctcaaagcccttctacaccacacagctcacca |
11654680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 11668416 - 11668448
Alignment:
| Q |
40 |
cctcaaagcccttctacaccacacagctcacca |
72 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
11668416 |
cctcaaagcccttctacaccacacagctcacca |
11668448 |
T |
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