View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19708_low_22 (Length: 242)

Name: NF19708_low_22
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19708_low_22
NF19708_low_22
[»] chr3 (1 HSPs)
chr3 (23-128)||(50585436-50585541)
[»] chr5 (1 HSPs)
chr5 (194-229)||(39690595-39690630)
[»] chr2 (3 HSPs)
chr2 (194-229)||(17663584-17663619)
chr2 (194-226)||(9154109-9154141)
chr2 (194-226)||(38449827-38449859)
[»] chr1 (4 HSPs)
chr1 (194-229)||(15512890-15512925)
chr1 (194-229)||(28949073-28949108)
chr1 (194-230)||(51996913-51996949)
chr1 (193-226)||(12843999-12844032)
[»] chr6 (1 HSPs)
chr6 (194-229)||(19838891-19838926)
[»] chr4 (2 HSPs)
chr4 (194-229)||(12624656-12624691)
chr4 (194-226)||(26203090-26203122)
[»] chr7 (2 HSPs)
chr7 (194-228)||(29636151-29636185)
chr7 (194-226)||(25098244-25098276)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 50585436 - 50585541
Alignment:
Q  23 gacaaaagataatatatttactatcaaatttctgaaggtatatcccaatgatatgagcagatacatcaaagaaatattaagaacgaggttcagattttga 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50585436 gacaaaagataatatatttactatcaaatttctgaaggtatatcccaatgatatgagcagataaatcaaagaaatattaagaacgaggttcagattttga 50585535  T
Q  123 aatatg 128  Q
    ||||||    
T  50585536 aatatg 50585541  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 39690630 - 39690595
Alignment:
Q  194 tactccctccgtccctatatgtaacccccctttgct 229  Q
    ||||||||||||||||||||||||||||||||||||    
T  39690630 tactccctccgtccctatatgtaacccccctttgct 39690595  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 17663584 - 17663619
Alignment:
Q  194 tactccctccgtccctatatgtaacccccctttgct 229  Q
    ||||||||||||||||||||||||||||||||||||    
T  17663584 tactccctccgtccctatatgtaacccccctttgct 17663619  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 9154109 - 9154141
Alignment:
Q  194 tactccctccgtccctatatgtaaccccccttt 226  Q
    |||||||||||||||||||||||||| ||||||    
T  9154109 tactccctccgtccctatatgtaaccacccttt 9154141  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 38449859 - 38449827
Alignment:
Q  194 tactccctccgtccctatatgtaaccccccttt 226  Q
    ||||||||||||||||||||||||||| |||||    
T  38449859 tactccctccgtccctatatgtaaccctccttt 38449827  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 15512925 - 15512890
Alignment:
Q  194 tactccctccgtccctatatgtaacccccctttgct 229  Q
    ||||||||||||||||||||||||||||||||||||    
T  15512925 tactccctccgtccctatatgtaacccccctttgct 15512890  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 28949108 - 28949073
Alignment:
Q  194 tactccctccgtccctatatgtaacccccctttgct 229  Q
    ||||||||||||||||||||||||||||||||||||    
T  28949108 tactccctccgtccctatatgtaacccccctttgct 28949073  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 230
Target Start/End: Original strand, 51996913 - 51996949
Alignment:
Q  194 tactccctccgtccctatatgtaacccccctttgcta 230  Q
    |||||||||||||||||||||||| ||||||||||||    
T  51996913 tactccctccgtccctatatgtaaaccccctttgcta 51996949  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 12843999 - 12844032
Alignment:
Q  193 ctactccctccgtccctatatgtaaccccccttt 226  Q
    ||||||||||||||||||||||||||| ||||||    
T  12843999 ctactccctccgtccctatatgtaaccacccttt 12844032  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 19838891 - 19838926
Alignment:
Q  194 tactccctccgtccctatatgtaacccccctttgct 229  Q
    |||||||||||||||||||||||| |||||||||||    
T  19838891 tactccctccgtccctatatgtaatccccctttgct 19838926  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 12624656 - 12624691
Alignment:
Q  194 tactccctccgtccctatatgtaacccccctttgct 229  Q
    |||||||||||||||||||||||||||||| |||||    
T  12624656 tactccctccgtccctatatgtaaccccccgttgct 12624691  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 26203090 - 26203122
Alignment:
Q  194 tactccctccgtccctatatgtaaccccccttt 226  Q
    |||||||||||||||||||||||| ||||||||    
T  26203090 tactccctccgtccctatatgtaagcccccttt 26203122  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 29636185 - 29636151
Alignment:
Q  194 tactccctccgtccctatatgtaacccccctttgc 228  Q
    |||||||||||||||||||||||| ||||||||||    
T  29636185 tactccctccgtccctatatgtaaaccccctttgc 29636151  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 25098244 - 25098276
Alignment:
Q  194 tactccctccgtccctatatgtaaccccccttt 226  Q
    |||||||||||||||||||||||||| ||||||    
T  25098244 tactccctccgtccctatatgtaaccacccttt 25098276  T

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