View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19708_low_23 (Length: 218)
Name: NF19708_low_23
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19708_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 209
Target Start/End: Original strand, 34796536 - 34796739
Alignment:
| Q |
6 |
agtagaagcataggtagtgttggtgctgcttcttctgtgtgtttggagctatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtg |
105 |
Q |
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| T |
34796536 |
agtacaagcataggtagtgttggtgctggttcttctgtgtgtttggagctatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtg |
34796635 |
T |
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| Q |
106 |
ttgttgtttacttccctcaaggacacttggaacatcttcatgattttccgttatctttttcggataatattccttctcatgtgttctgtcgtgttgatga |
205 |
Q |
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| T |
34796636 |
ttgttgtttacttccctcaaggacacttggaacatcttcatgattttccgttatctttttcggataatattccttctcatgtgttctgtcgtgttgttga |
34796735 |
T |
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| Q |
206 |
tgtc |
209 |
Q |
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|||| |
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| T |
34796736 |
tgtc |
34796739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 139
Target Start/End: Original strand, 22234596 - 22234680
Alignment:
| Q |
55 |
tatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtgttgttgtttacttccctcaaggacacttggaaca |
139 |
Q |
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| T |
22234596 |
tatggcatgcttgtgctggtcctcttacctcacttcctaagaaaggaaatgttgtggtgtattttccacaaggtcacttggaaca |
22234680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 4274533 - 4274417
Alignment:
| Q |
38 |
ttctgtgtgtttggagctatggcatgcttgtgctggtcctatgatctctttgccaaagaaaggaagtgttgttgtttacttccctcaaggacacttggaa |
137 |
Q |
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| T |
4274533 |
ttctgtttgtttggagctatggcatgcttgtgctggtcctttgatctctttaccaaagaaaggaagcattgttgtttatgttccacaaggacactttgaa |
4274434 |
T |
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| Q |
138 |
catcttcatgattttcc |
154 |
Q |
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| T |
4274433 |
caagctcatgattttcc |
4274417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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