View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19708_low_5 (Length: 545)
Name: NF19708_low_5
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19708_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 108 - 536
Target Start/End: Complemental strand, 31524172 - 31523748
Alignment:
| Q |
108 |
tacaatcaaaccaaaagcattcaagtttaagtcattgtgtccttattaatttattgttggttatgaaattgatttttagtagctgcttaattattttatt |
207 |
Q |
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| T |
31524172 |
tacaatcaaaccaaaagcattcaagtttaagtcattgtgtccttattaatttattgttggttatgaaagtgatttgtagtagctgcttaactattttatt |
31524073 |
T |
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| Q |
208 |
atgcatagagaacaattgttgtatgaaatggaggagagtgttgaagtaactggttattatggtttgttgtgaactaggggagacagtttccattatacag |
307 |
Q |
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| T |
31524072 |
atgcatagagaacaattgttgtgtgaaatggaggagagtgttgaagtgattggttattatggtttgttgtgaactaggggagacagtttccattatacag |
31523973 |
T |
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| Q |
308 |
tcttattatgtacaaaatttagtggatgttctgataaggatatggtcatttgtttagattatgaacctatatatgtaacacatggttatgacttatgcct |
407 |
Q |
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| T |
31523972 |
tcttattatgtacaaaatttagtggatgttctgataaggatatggtcatttgtttagattatgaacc----tatgaaacacatggttatgacttatgcct |
31523877 |
T |
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| Q |
408 |
ctgttgataaaattatggtgttaaatattgtagtgtcagtggtgtaaaattttggtcttcaatacttgtatgtgccatgagccacttgatcacaacctta |
507 |
Q |
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| T |
31523876 |
ctgttgataaaattatggtgttaaatattgtagtgtcagtggtgtaaaattttggtcttcaatacttgtatgtgccatgagccacttgatcgcaaccttt |
31523777 |
T |
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| Q |
508 |
atttcctgctcaatgtcattcacaggttc |
536 |
Q |
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| T |
31523776 |
atttcctgctcaatgtcattcacaggttc |
31523748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 2 - 97
Target Start/End: Complemental strand, 31524396 - 31524301
Alignment:
| Q |
2 |
tttacatatttttatattttcatgtcacattgttgtatattgatattttaatctttcgctattgaacatgtactgtttaatgtgatttattggaat |
97 |
Q |
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| T |
31524396 |
tttacatatttttatattttcatgtcacattgttgtatattgatattttaatctttcgctattgaacatgtaccgtttaatgtgatttatcggaat |
31524301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 400 - 478
Target Start/End: Complemental strand, 45652491 - 45652409
Alignment:
| Q |
400 |
ttatgcctctgttgataaaattatggtgttaaatattgtagtgtc----agtggtgtaaaattttggtcttcaatacttgtat |
478 |
Q |
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| T |
45652491 |
ttatgcctctgatggtaaaattatggtgttaaatattgttgtggccggtagtagtgtaaaattgtggtcttcaatacttgtat |
45652409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 336 - 365
Target Start/End: Complemental strand, 45652550 - 45652521
Alignment:
| Q |
336 |
ttctgataaggatatggtcatttgtttaga |
365 |
Q |
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| T |
45652550 |
ttctgataaggatatggtcatttgtttaga |
45652521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 31497647 - 31497555
Alignment:
| Q |
181 |
ttttagtagctgcttaattattttattatgcatagagaacaattgttgtatgaaatggaggagagtgttgaagtaactggttattatggtttg |
273 |
Q |
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| T |
31497647 |
ttttagtagctgcttatctattttattatggatagagaataatttttgtgtgaaatggtggaggatgttgaagtaattgggtgttatggtttg |
31497555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 273
Target Start/End: Complemental strand, 31497853 - 31497740
Alignment:
| Q |
160 |
attgttggttatgaaattgatttttagtagctgcttaattattttattatgcatagagaacaattgttgtatgaaatggaggagagtgttgaagtaactg |
259 |
Q |
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| T |
31497853 |
attgttggatgtggaagtgatttgtagtagctgcataactattttattatgtatggagaacaatttttttgtgaaatggggtagactgttgaagtaattg |
31497754 |
T |
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| Q |
260 |
gttattatggtttg |
273 |
Q |
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| T |
31497753 |
ggtgttatggtttg |
31497740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 467 - 536
Target Start/End: Complemental strand, 41022829 - 41022759
Alignment:
| Q |
467 |
caatacttgtatgtgccatgagccacttgatcacaacc-ttaatttcctgctcaatgtcattcacaggttc |
536 |
Q |
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| T |
41022829 |
caatacttgtatgtgccatgagccacttgatcccaacctttggtttcctactcaatatcattcacaggttc |
41022759 |
T |
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