View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19708_low_6 (Length: 503)

Name: NF19708_low_6
Description: NF19708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19708_low_6
NF19708_low_6
[»] chr2 (1 HSPs)
chr2 (354-488)||(358314-358448)
[»] chr6 (3 HSPs)
chr6 (125-204)||(7536967-7537046)
chr6 (163-204)||(2314508-2314549)
chr6 (163-204)||(32444469-32444510)
[»] chr4 (1 HSPs)
chr4 (163-204)||(43046312-43046353)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 6e-63; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 354 - 488
Target Start/End: Original strand, 358314 - 358448
Alignment:
Q  354 acacgtcataatgtgtgttgtgtgtatagacgatgtgatgaatggtatgatttgagtttaatgattatgttaatgcattttgtggctgataattgattta 453  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  358314 acacgtcataatgtgtgttgtgtgtatagacaatgtgatgaatgatatgatttgagtttaatgattatgttaatgtattttgtggctgataattgattta 358413  T
Q  454 tatgtttgtgtcttgcacgagttatgtttatgtgt 488  Q
    |||||||||||||||||||||||||||||||||||    
T  358414 tatgtttgtgtcttgcacgagttatgtttatgtgt 358448  T

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Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 7537046 - 7536967
Alignment:
Q  125 tttcccgcccataatctaggtttagaggtatgcattagttgtttgcattgtacattgggattagataataagataagata 204  Q
    |||||||||||||||||||| |||| | | |||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  7537046 tttcccgcccataatctaggattagggctttgcattagttgtttacattgtacattaggattagataataagataagata 7536967  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 2314508 - 2314549
Alignment:
Q  163 ttgtttgcattgtacattgggattagataataagataagata 204  Q
    ||||||||||||||  || |||||||||||||||||||||||    
T  2314508 ttgtttgcattgtagtttaggattagataataagataagata 2314549  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 32444510 - 32444469
Alignment:
Q  163 ttgtttgcattgtacattgggattagataataagataagata 204  Q
    ||||||||||||||  || |||||||||||||||||||||||    
T  32444510 ttgtttgcattgtagtttaggattagataataagataagata 32444469  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 43046312 - 43046353
Alignment:
Q  163 ttgtttgcattgtacattgggattagataataagataagata 204  Q
    |||||| ||||||||||| |||||| ||||||||||||||||    
T  43046312 ttgtttacattgtacattaggattaaataataagataagata 43046353  T

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