View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19709_high_17 (Length: 238)
Name: NF19709_high_17
Description: NF19709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19709_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 21838787 - 21838984
Alignment:
| Q |
1 |
taacaactaattcctaatgttaaacaattaatatagtgatccannnnnnnnnnnnnnnngaggaaaagtgatccatttgacatttttgtttcctaaatta |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21838787 |
taacaactaattcctaatgttaagcaattaatatagtgatccatttttatttttttt--gaggaaaagtgatccatttgacatttttgtttcctaaatta |
21838884 |
T |
|
| Q |
101 |
gtaattatacgaacaaatttattttttaatttgcagcagtggccaggaagggatatctgactgcgtacgtcacctatatatagtagggcagatgtatata |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
21838885 |
gtaactatacgaacaaatttattttttaatttgcagcagtggccaggaaggg--atctgactgcgtacataacctatatatagtagggcagatgtatata |
21838982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University