View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19709_high_5 (Length: 354)
Name: NF19709_high_5
Description: NF19709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19709_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 343
Target Start/End: Original strand, 51382436 - 51382779
Alignment:
| Q |
19 |
acttcgtttaccgtactggaaattgcattcattataccacacgaaactaccccacttgtttctatgcaagtgtaaattgttgctttgcaata-------- |
110 |
Q |
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| T |
51382436 |
acttcgtttaccgtactggaaattgcattcattataccacacgaaactaccccacttgtttctatgcaagtgtaaattgttgctttgcaatattgaaagc |
51382535 |
T |
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| Q |
111 |
-----------ttgatcggatcaagttttgtgttgtttttaggagaaatagatggtgaattatattggaaggaaccgtctcatggctacatatttatata |
199 |
Q |
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| T |
51382536 |
gaaaaagaatattgatcggatcaagttttgtgttgtttttaggagaaatagatggtgaattatattggaaggaaccgtctcatggctacatatttatata |
51382635 |
T |
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| Q |
200 |
taagatgaaacatgaataactctatgttttgtgtgcattttctgctcctactctaacactaatctttaccaggtatcattagcttttcaaatttatttct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51382636 |
taagatgaaacatgaataactctatgttttgtgtgcattttctgttcctactctaacactaatctttaccaggtatcattagcttttcaaatttatttct |
51382735 |
T |
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| Q |
300 |
actattggatttcagattcagccttgaaatattttcatgccttt |
343 |
Q |
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| T |
51382736 |
actattggatttcagattcagccttgaaatattttcatgccttt |
51382779 |
T |
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