View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19709_low_1 (Length: 529)
Name: NF19709_low_1
Description: NF19709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19709_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 180 - 521
Target Start/End: Original strand, 47688752 - 47689087
Alignment:
| Q |
180 |
gtaattgcatatgtcagtggaaagcaaatagcaacttctttccaaaagtaatctactacatcgaactcgaaagaatccatatccattgatctgttgtaat |
279 |
Q |
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| T |
47688752 |
gtaattgcatatgtcagtggaaagcaaatagcaacttctttccaaaagtaatctattacatcgaacttgacagaatcc------attgatctgttgtaat |
47688845 |
T |
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| Q |
280 |
atgtggtgctcacatcttcagccgatgtagctgcaattgcgagtggtgggtggtccaaatgatcattgtgcatatgcagaggaatgctttgatgagtgaa |
379 |
Q |
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| T |
47688846 |
atgtggtgctcacatcttcagccgatgtagctgcaattgtgagtggtgggtggtccaaatgatcattgtgcatatgcagaggaatgctttgatgagtgaa |
47688945 |
T |
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| Q |
380 |
attgttggagtttttacctgtgaggtgttgaactaatgatctgaactcagaagcatggcaatcccttaacagtataggattagatatataggttacctta |
479 |
Q |
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| T |
47688946 |
attgttggagtttttacctgtgaggtgttgaactaatgatctgaactcagaagcatggcaatcccttaacagtataggattagatatataggttacctta |
47689045 |
T |
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| Q |
480 |
actgttttctttagtgttttatgtattgccttttgatgatgt |
521 |
Q |
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| T |
47689046 |
actgttttctttagtgttttatgtattgccttttggtgatgt |
47689087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 47688543 - 47688711
Alignment:
| Q |
18 |
attcatattgttgaggaagcaacgccggaaaatcccgctctgaaaccatgttgagtaattgagagaatttgaaaatgaaatcata-ttattcaatgatat |
116 |
Q |
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| T |
47688543 |
attcatattgttgaggaagcaacgcgggaaaatcccgctctgaaaccatgttgagtaattgagagaatttgaaaatgaaatcatatttattcaatgatat |
47688642 |
T |
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| Q |
117 |
actgagtgaaggaatacaattgagtactcaatgaaatcatattattaaatgaacttagtagcggtaatt |
185 |
Q |
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| T |
47688643 |
actgagtgaaggaatacaattgagtactcaatgaaatcatattattaaatgaacttagtagcggtaatt |
47688711 |
T |
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