View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19709_low_10 (Length: 266)
Name: NF19709_low_10
Description: NF19709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19709_low_10 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 3 - 266
Target Start/End: Complemental strand, 34194813 - 34194550
Alignment:
| Q |
3 |
tctacgacgctttacaaatccttcaatatttcatttgtgattactgaaaaggaagtttcttatggatatgaacttttggacaagtccattgtttcaaggt |
102 |
Q |
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| T |
34194813 |
tctacgacgctttacaaatccttcaatatttcatttgtgattactgaaaaggaagtttcttatggatatgaacttttggacaagtccattgtttcaaggt |
34194714 |
T |
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| Q |
103 |
acatgctaactccaatcggtcaagtatcgcgttacatgttgtccgatcagacaaagagttggcaacttgtctttgttggtccttcggatcagtgcgataa |
202 |
Q |
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| T |
34194713 |
acatgctaactccaatcggtcaagtatcgcgttacatgttgtccgatcagacaaagagttggcaacttgtctttgttggtccttcggatcagtgcgataa |
34194614 |
T |
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| Q |
203 |
ttatgctctttgtggtgcaaattctaattgtgatattgataattctccaatatgtgaatgtttt |
266 |
Q |
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| T |
34194613 |
ttatgctctttgtggtgcaaattctaattgtgatattgataattctccaatatgtgaatgtttt |
34194550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 31 - 263
Target Start/End: Original strand, 34216791 - 34217023
Alignment:
| Q |
31 |
tttcatttgtgattactgaaaaggaagtttcttatggatatgaacttttggacaagtccattgtttcaaggtacatgctaactccaatcggtcaagtatc |
130 |
Q |
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| T |
34216791 |
tttcatttgtgattactgagaaggaaatttcttatggatatgaacttttgaacaagtctgttgtttcaagatacttggtatcttcaactggtcaaatagc |
34216890 |
T |
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| Q |
131 |
gcgttacatgttgtccgatcagacaaagagttggcaacttgtctttgttggtccttcggatcag-tgcgataattatgctctttgtggtgcaaattctaa |
229 |
Q |
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| T |
34216891 |
gcgatacatgttgtcggatcagacaaatagttggcaacttttctttgtcggacctgcaga-cagttgtgataattatgctatctgtggtgcaaattctaa |
34216989 |
T |
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| Q |
230 |
ttgtgatattgataattctccaatatgtgaatgt |
263 |
Q |
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| T |
34216990 |
ctgtgatattgataagtcaccagtatgtgaatgt |
34217023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 34205378 - 34205444
Alignment:
| Q |
43 |
ttactgaaaaggaagtttcttatggatatgaacttttggacaagtccattgtttcaaggtacatgct |
109 |
Q |
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| T |
34205378 |
ttactgagacggaagtttcttatggatatgaacttttggaatcatcaatagtttcaaggtacatgct |
34205444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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