View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19709_low_16 (Length: 247)
Name: NF19709_low_16
Description: NF19709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19709_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4399474 - 4399703
Alignment:
| Q |
1 |
aagaactcgaaccaatcatnnnnnnntaccacatattagaaccaacctcaaacacatgcacttcaatcataacctacaaaatagaagcaccatcaagcat |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4399474 |
aagaactcgaaccaatcataaaaaaataccacatattagaaccaacctcaaacacatgcacttcaatcataacctacaaaatagaagcaccatcaagcat |
4399573 |
T |
|
| Q |
101 |
agtgtggccatatgttagaagctttgagaatccacaaaaatacaaacatttcatcaaaggttgcaacatgaaaggtgatggaaacgttggtagcattaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4399574 |
agtgtggccatatgttagaagctttgagaatccacaaaaatacaaacatttcatcaaaggttgcaacatgaaaggtgatggaaacgttggtagcattaga |
4399673 |
T |
|
| Q |
201 |
gaagttaccgttgtttcgggtttaccggct |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
4399674 |
gaagttaccgttgtttcgggtttaccggct |
4399703 |
T |
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