View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19709_low_18 (Length: 238)
Name: NF19709_low_18
Description: NF19709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19709_low_18 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 39058921 - 39058704
Alignment:
| Q |
18 |
aggttttcttcaactcagctgcagagcaagagcaaagcaaaatcaatcaacgcagcagtagacgacacatggatgaaggagaaatagggaagaataaatt |
117 |
Q |
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| T |
39058921 |
aggttttcttcaactcagctgcagagcaagagcaaagcaaaatcaatcaacgcagcagtagacgacacatggatgaag---aaatagggaagaataaatt |
39058825 |
T |
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| Q |
118 |
ggaactgcaactaagcctatagtattgcctaatatgttgagttcaagaagtttatcaagagtttgagattgagaactagctcaaatccaaaaaggggagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39058824 |
ggaactgcaactaagcctatagtattgcctaatatgttgagttcaagaagtttatcaagagtttgagattgagaactagctcaaatccaaaaaggggagt |
39058725 |
T |
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| Q |
218 |
cttgttactgatttgacttgc |
238 |
Q |
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| T |
39058724 |
cttgttactgatttgacttgc |
39058704 |
T |
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