View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19709_low_2 (Length: 494)
Name: NF19709_low_2
Description: NF19709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19709_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 233 - 485
Target Start/End: Original strand, 40827442 - 40827695
Alignment:
| Q |
233 |
tcatcaatttagtccatactatttttgaaggaatttagtccatactattaaaatttgaatggatcaattatggattttaatatacttttaaagagtaagt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40827442 |
tcatcaatttagtccatactatttttgaaggaatttagtccatactattaaaatttgaatggatcaattatggattttaatatacttttaaagagtaagt |
40827541 |
T |
|
| Q |
333 |
tgatagattttactatagtttaaggattcattagtataattatatagtttaatgataaattggagagattgataatttagaggttaacttggtaatttag |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40827542 |
tgatagattttactatagtttaaggattcattagtataattatatagtttaaagataaattggagagattgataatttagaggttaacttggtaatttag |
40827641 |
T |
|
| Q |
433 |
ttaattatat-aaaagtaagaaagcaaaggggtggaacaatgcacatgatgatg |
485 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40827642 |
ttaattatataaaaagtaagaaagcaaaggggtggaacaatgcacatgatgatg |
40827695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 40827295 - 40827391
Alignment:
| Q |
88 |
tatagttagtttgggaattataggaagaatgacatccattatatagagaagaatacattactttctaaactatcattcacttttcaatttagtcctt |
184 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40827295 |
tatagttagtttgggaattatagggagaatgacatccattatatagagaagaatacattactttctaaactatcattcacttttcaatttagtcctt |
40827391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University