View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19709_low_20 (Length: 233)
Name: NF19709_low_20
Description: NF19709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19709_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 35364703 - 35364505
Alignment:
| Q |
18 |
aaagggtttcgtaattattttctaacttacaacgaattattggtgaacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatggg |
117 |
Q |
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| T |
35364703 |
aaagggtttcataattattttctaacttacaacgaattattggtgaacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatggg |
35364604 |
T |
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| Q |
118 |
attaaattatgcacacctcttgcaaacttgtgccaaaatcgagacctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcata |
216 |
Q |
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| T |
35364603 |
attaaattatgcacacctcttgcaaacttgtgccaaaatcgagacctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcata |
35364505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 63 - 216
Target Start/End: Complemental strand, 35376422 - 35376269
Alignment:
| Q |
63 |
aacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatgggattaaattatgcacacctcttgcaaacttgtgccaaaatcgagac |
162 |
Q |
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| T |
35376422 |
aacaggatttgttacatcaaagatagcttgttgtggacaaggcccttacaatgggattggactatgcacacccctttcaaacttgtgccaaaatcgagac |
35376323 |
T |
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| Q |
163 |
ctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcata |
216 |
Q |
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| T |
35376322 |
ctttatgcattttgggatccattccatccatctgaaaaagctagcagaatcata |
35376269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 63 - 216
Target Start/End: Complemental strand, 35357867 - 35357714
Alignment:
| Q |
63 |
aacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatgggattaaattatgcacacctcttgcaaacttgtgccaaaatcgagac |
162 |
Q |
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| T |
35357867 |
aacaggatttgttacagcaaaggatgcttgttgtggtcaagggcgattcaacgggattggactgtgtacacctatttcaaaattgtgcccaaatcgaaac |
35357768 |
T |
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| Q |
163 |
ctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcata |
216 |
Q |
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| T |
35357767 |
ctttatgcattttgggatgcatttcatccatctgaaaaagctagcagaatcata |
35357714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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