View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19709_low_21 (Length: 224)
Name: NF19709_low_21
Description: NF19709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19709_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 4838331 - 4838497
Alignment:
| Q |
13 |
agatgaaggaatgttactggttcaaattattcgactataatgtgtgtgcacaacaaatataatgtgtccatgaccgtgaaatgatgaagctaaaaataaa |
112 |
Q |
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| T |
4838331 |
agatgaaggaatgttactggttcaaattattcgactataatgtgtgtgcacaacaaatataatgtgtccatgaccgtgaaatgatgaagctaaaaataaa |
4838430 |
T |
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| Q |
113 |
agccgagcaatctataaagtgtacccttcgattgcatctctcttcgaatgatctgtccagaggatag |
179 |
Q |
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| T |
4838431 |
agccgagcaatctataaggtgtgcccttcgattgcatctctcttcgaacgatctgtccagaggatag |
4838497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 4858307 - 4858493
Alignment:
| Q |
24 |
tgttactggttcaaattattcgactataatgtgtgtgcacaacaaatataatgtgtccatgaccgtgaaa--tgatgaagctaaaaataaaagccgagca |
121 |
Q |
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| T |
4858307 |
tgttactaattcaaattattcgaatgtaatgtctgtgcgcaacaaatataatgtgtcagtcaccgtaaaaaatgatgaagctaaaaatgaaaactgagcg |
4858406 |
T |
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| Q |
122 |
atctataaagtgtacccttcgattgcatctctcttcgaatgatctgtccagaggatagcatgcaagtgtagcagggatgtttcagtt |
208 |
Q |
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| T |
4858407 |
atctataaggattacccttcaattgcatctctctttgaacgatctgtccagaggatagcatgcaagtgtggcagggatgtttcagtt |
4858493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 4839910 - 4839943
Alignment:
| Q |
175 |
gatagcatgcaagtgtagcagggatgtttcagtt |
208 |
Q |
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| T |
4839910 |
gatagcatgcaagtgtagcagggatgtttcagtt |
4839943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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