View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19709_low_7 (Length: 304)
Name: NF19709_low_7
Description: NF19709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19709_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 297
Target Start/End: Complemental strand, 34194439 - 34194163
Alignment:
| Q |
21 |
tatgggaatgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtaca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34194439 |
tatgggaatgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtaca |
34194340 |
T |
|
| Q |
121 |
gcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttggatgtcagaaaattaccctctggaggacaagacc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34194339 |
gcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttggatgtcagaaaattaccctctggaggacaagacc |
34194240 |
T |
|
| Q |
221 |
tttacataagagttgcagcttcagaattaggtattaaactgctaatatttttattccatttaatattctgatgatgt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34194239 |
tttacataagagttgcagcttcagaattaggtattaaactgctaatatttttattccatttaatattctgatgatgt |
34194163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 34217137 - 34217360
Alignment:
| Q |
21 |
tatgggaatgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtaca |
120 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34217137 |
tatgagaatgaagttgccagacacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtaca |
34217236 |
T |
|
| Q |
121 |
gcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttggatgtcagaaaattaccctctggaggacaagacc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34217237 |
gcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttggatgtcagaaaattaccctctggagggcaagacc |
34217336 |
T |
|
| Q |
221 |
tttacataagagttgcagcttcag |
244 |
Q |
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|||||||||||||||||| ||||| |
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| T |
34217337 |
tttacataagagttgcagattcag |
34217360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 34205712 - 34205943
Alignment:
| Q |
21 |
tatgggaatgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtaca |
120 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| |||||||||||| || |||| | |||||||| ||| ||| |
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| T |
34205712 |
tatgggaatgaagttgcctgatacatcaaaatcttggtttaataagagtatgagccttgaagaatgtgagaaatcctgtctaggaaactgtaattgcaca |
34205811 |
T |
|
| Q |
121 |
gcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttggatgtcagaaaattaccctctggaggacaagacc |
220 |
Q |
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|
|||||||||| ||||||||||||||||||||||||||| ||| | |||||||||||||||||| | |||| || |||| ||| ||||||||||||||| |
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| T |
34205812 |
gcatatgcaagtttagatgtcagagatggtggaagtggttgcatactttggtttaataacattcttgatgccaaaaaactacgtgctggaggacaagacc |
34205911 |
T |
|
| Q |
221 |
tttacataagagttgcagcttcagaattaggt |
252 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
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| T |
34205912 |
tttacataagagttgcagcttcagaactaggt |
34205943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 5526032 - 5525872
Alignment:
| Q |
28 |
atgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatg |
127 |
Q |
| |
|
|||||||||||||| || |||| |||||||| | | |||||| ||| |||||| |||||| || | | ||| | | ||| |||||||| || ||||||| |
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| T |
5526032 |
atgaagttgccagacacgtcaacatcttggtatgacaagagcttgagcctcgaggaatgtaagacaatgtgtttgaaaaattgttcttgcactgcatatg |
5525933 |
T |
|
| Q |
128 |
caaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttgga |
188 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||||| ||||||||||| |||||| |||| |
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| T |
5525932 |
caaattcagatgtcagagatggtgggagtggctgcttactttggtttaacaacattgtgga |
5525872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 5848774 - 5848934
Alignment:
| Q |
28 |
atgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatg |
127 |
Q |
| |
|
|||||||||||||| || |||| |||||||| | | |||||| ||| ||| || |||||| || | | || | | ||||||| |||| || ||||||| |
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| T |
5848774 |
atgaagttgccagacacgtcaacatcttggtatgacaagagcttgagccttgaggaatgtaagacactgtgcttgaaaaactgtacttgcactgcatatg |
5848873 |
T |
|
| Q |
128 |
caaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttgga |
188 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||| |||| |
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| T |
5848874 |
caaatttagatatcagagatggtgggagtggctgcttactttggtttaacaacattgtgga |
5848934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 174
Target Start/End: Complemental strand, 5484988 - 5484842
Alignment:
| Q |
28 |
atgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatg |
127 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||| | |||||| ||| ||| | |||||| || | | ||| | | |||||||||||| || ||||||| |
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| T |
5484988 |
atgaagttgccagatacgtcagcatcgtggtttgacaagagcttgagccttaaggaatgtaagacaatgtgtttgaaaaactgttcttgcactgcatatg |
5484889 |
T |
|
| Q |
128 |
caaatttagatgtcagagatggtggaagtggctgcttgctttggttt |
174 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| ||||||||| |
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| T |
5484888 |
caaatttagatatcagagatggtgggagtggctgcttactttggttt |
5484842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 183
Target Start/End: Complemental strand, 5503195 - 5503040
Alignment:
| Q |
28 |
atgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatg |
127 |
Q |
| |
|
|||||||||||||| || |||| |||||||| | | | |||| ||| ||| || |||||| || | | ||| | | |||||||||||| || ||||||| |
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|
| T |
5503195 |
atgaagttgccagacacgtcaacatcttggtatgacaggagcttgagccttgaggaatgtaagacaatgtgtttgaaaaactgttcttgcactgcatatg |
5503096 |
T |
|
| Q |
128 |
caaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacatt |
183 |
Q |
| |
|
|||||| |||| ||||||||||||| ||||||||||| ||||||||| | |||||| |
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|
| T |
5503095 |
caaattcagatatcagagatggtgggagtggctgcttactttggtttgacaacatt |
5503040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 5854152 - 5854230
Alignment:
| Q |
105 |
aaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacatt |
183 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||| | |||||| |
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| T |
5854152 |
aaactgttcttgcactgcatatgcaaatttagatatcagatatgttggaagtggctgcttactttggtttgacaacatt |
5854230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 5802454 - 5802525
Alignment:
| Q |
105 |
aaactgttcttgtacagcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaa |
176 |
Q |
| |
|
|||||||||||| || ||||||||||||| |||| |||| |||||||| ||||||||||| ||||||||||| |
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| T |
5802454 |
aaactgttcttgcaccgcatatgcaaattcagatatcagggatggtggtagtggctgcttactttggtttaa |
5802525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 5490382 - 5490222
Alignment:
| Q |
28 |
atgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatg |
127 |
Q |
| |
|
||||||||||||||||||||| ||| | | ||| |||||| ||| ||| || |||||| || | | ||| | | ||||||| |||| || ||||||| |
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|
| T |
5490382 |
atgaagttgccagatacatcatcatcgtattataacaagagcttgagccttgaggaatgtaagacaatgtgtttgaaaaactgtacttgcactgcatatg |
5490283 |
T |
|
| Q |
128 |
caaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttgga |
188 |
Q |
| |
|
|||||| |||| ||| ||||||||| ||||||||| | ||||||||||| |||||| |||| |
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|
| T |
5490282 |
caaattcagatatcaaagatggtgggagtggctgcatactttggtttaacaacattgtgga |
5490222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 176
Target Start/End: Original strand, 5828045 - 5828193
Alignment:
| Q |
28 |
atgaagttgccagatacatcaaaatcttggtttaataagagcatgaacctcgaagaatgtgagcgattctgtatcagaaactgttcttgtacagcatatg |
127 |
Q |
| |
|
|||||||||||||| || |||| |||||||| | | |||| | ||| ||| || |||||| || | | ||| | | |||||||||||| | ||||||| |
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| T |
5828045 |
atgaagttgccagacacgtcaacatcttggtatgacaagaacttgagccttgaggaatgtaagacaatgtgtttgaaaaactgttcttgcattgcatatg |
5828144 |
T |
|
| Q |
128 |
caaatttagatgtcagagatggtggaagtggctgcttgctttggtttaa |
176 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
5828145 |
caaattctgatatcagagatggtgggagtggctgcttactttggtttaa |
5828193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 20343732 - 20343665
Alignment:
| Q |
121 |
gcatatgcaaatttagatgtcagagatggtggaagtggctgcttgctttggtttaataacattttgga |
188 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| ||||| ||||||||| | || |||||||| |
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|
| T |
20343732 |
gcatatgcaaatttagatatcagagatggtgggagtggttgcttactttggtttgacaatattttgga |
20343665 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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