View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19709_low_8 (Length: 290)
Name: NF19709_low_8
Description: NF19709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19709_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 43564633 - 43564376
Alignment:
| Q |
17 |
aaggtggtagaatctagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgttataagggttcatc |
116 |
Q |
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| T |
43564633 |
aaggtggtagaatctagtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgttataagggttcatc |
43564534 |
T |
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| Q |
117 |
tcaacacttttaggctattggaagagaaaacactaccaaatttagttgataaatttggttggtgcacttgggatgctttctatttaactgttaatcctat |
216 |
Q |
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| T |
43564533 |
tcaacacttttaggctattggaagagaaaacactaccaaatttagttgataaatttggttggtgcacttgggatgctttctatttaactgttaatcctat |
43564434 |
T |
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| Q |
217 |
tggtgtttttcatggtcttgagggtttttctaaaggcggagttgaaccgaggtttgtt |
274 |
Q |
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| T |
43564433 |
tggtgtttttcatggtcttgagggtttttctaaaggcggagttgaaccgaggtttgtt |
43564376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 32 - 274
Target Start/End: Complemental strand, 36432573 - 36432331
Alignment:
| Q |
32 |
agtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgttataagggttcatctcaacacttttaggc |
131 |
Q |
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| T |
36432573 |
agtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgctttgagggttcatctcaacacttttaggc |
36432474 |
T |
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| Q |
132 |
tattggaagagaaaacactaccaaatttagttgataaatttggttggtgcacttgggatgctttctatttaactgttaatcctattggtgtttttcatgg |
231 |
Q |
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| T |
36432473 |
tactggaagagaaaacacttccaaatttggttgataaatttggttggtgtacatgggatgctttttatttgactgtgaatcctattggtgtttttcatgg |
36432374 |
T |
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| Q |
232 |
tcttgagggtttttctaaaggcggagttgaaccgaggtttgtt |
274 |
Q |
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| T |
36432373 |
tctcgatgatttctcaaaaggcggcgttgagccaagatttgtt |
36432331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 32 - 274
Target Start/End: Original strand, 43973984 - 43974226
Alignment:
| Q |
32 |
agtttcaatgctattgcttatgttcatttttctgaaaatccttatgatttgatgaaagaagcttatagtgttataagggttcatctcaacacttttaggc |
131 |
Q |
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| T |
43973984 |
agtttcgatgcgattgcttatgttcatgtgagtgaaaatccttatactttgatgaatgaagcttatagtgctattagggttcatctcaatacttttaggc |
43974083 |
T |
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| Q |
132 |
tattggaagagaaaacactaccaaatttagttgataaatttggttggtgcacttgggatgctttctatttaactgttaatcctattggtgtttttcatgg |
231 |
Q |
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| ||||||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
43974084 |
ttttggaagagaaaacacttccaaatttggttgataaatttggttggtgtacatgggatgctttctatttaagtgttggtcctattggtgtttttcatgg |
43974183 |
T |
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| Q |
232 |
tcttgagggtttttctaaaggcggagttgaaccgaggtttgtt |
274 |
Q |
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|||||| | |||| ||| |||| |||||||| ||||||||| |
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| T |
43974184 |
tcttgatgagtttttgaaaagcggtgttgaacctaggtttgtt |
43974226 |
T |
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