View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19709_low_9 (Length: 290)

Name: NF19709_low_9
Description: NF19709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19709_low_9
NF19709_low_9
[»] chr8 (8 HSPs)
chr8 (35-290)||(4962256-4962515)
chr8 (177-290)||(12195535-12195648)
chr8 (177-290)||(12439963-12440076)
chr8 (177-290)||(12200553-12200666)
chr8 (177-290)||(12444981-12445094)
chr8 (183-289)||(15349100-15349206)
chr8 (30-102)||(12195382-12195454)
chr8 (30-102)||(12439810-12439882)
[»] chr3 (4 HSPs)
chr3 (165-290)||(11015222-11015347)
chr3 (165-290)||(11005659-11005784)
chr3 (164-290)||(11024234-11024360)
chr3 (160-290)||(47451637-47451767)
[»] chr4 (10 HSPs)
chr4 (115-290)||(37826727-37826908)
chr4 (197-290)||(43596162-43596255)
chr4 (166-214)||(49044002-49044050)
chr4 (177-247)||(7765850-7765920)
chr4 (180-234)||(7773621-7773675)
chr4 (177-247)||(7786672-7786742)
chr4 (193-290)||(7877970-7878070)
chr4 (164-234)||(48147506-48147576)
chr4 (133-211)||(48705198-48705276)
chr4 (23-76)||(48898785-48898838)
[»] chr6 (1 HSPs)
chr6 (181-234)||(21979424-21979477)
[»] chr7 (1 HSPs)
chr7 (23-87)||(48883879-48883943)
[»] chr5 (1 HSPs)
chr5 (160-214)||(29696427-29696481)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 35 - 290
Target Start/End: Complemental strand, 4962515 - 4962256
Alignment:
Q  35 gaacttttctcattgagagataatgcgtggaatcaaattgaggatcctcactttacttatttcaatgctgctcctattgtcaaagtaaggtcattcttta 134  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||    
T  4962515 gaacttttctcattgagagataatgcttggaatcaaattgaggatcctcactttatttatttcaatgctgctcctattgtcaaagtagggttattcttta 4962416  T
Q  135 atggggcctttcattgggttgctcgtcgtaatgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttcc 234  Q
    | | ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  4962415 acgaggcctttcattgggttgctcgtcgtaatgatttatcagtggatgttattattgtctttgatttaatggaaaggaaattgttagagatgcctcttcc 4962316  T
Q  235 ccatgattttgactatgatc----ctgtaaattatggtttgtgggtatttggagaatttc 290  Q
    | |||||||||||||||| |    |||||| |||||||||||||||||||||||||||||    
T  4962315 caatgattttgactatgaacctgtctgtaagttatggtttgtgggtatttggagaatttc 4962256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 290
Target Start/End: Original strand, 12195535 - 12195648
Alignment:
Q  177 tggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaattatggtttgtgggt 276  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||  ||| ||| ||| |   ||||||||||||||||    
T  12195535 tggaagttattgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtccagagcattatggtttgtgggt 12195634  T
Q  277 atttggagaatttc 290  Q
    ||||||| ||||||    
T  12195635 atttggaaaatttc 12195648  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 290
Target Start/End: Original strand, 12439963 - 12440076
Alignment:
Q  177 tggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaattatggtttgtgggt 276  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||  ||| ||| ||| |   ||||||||||||||||    
T  12439963 tggaagttattgttgtctttgatttaatggaaaggaaattgttagagatacctcttccagatgattacgaccatggtccagagcattatggtttgtgggt 12440062  T
Q  277 atttggagaatttc 290  Q
    ||||||| ||||||    
T  12440063 atttggaaaatttc 12440076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 290
Target Start/End: Original strand, 12200553 - 12200666
Alignment:
Q  177 tggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaattatggtttgtgggt 276  Q
    |||| |||||||||| |||||||||||| |||||||||||| ||||||| | ||||||  |||||||  || ||| || | |  ||||||||||||||||    
T  12200553 tggaagttattgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgatttcaaccatggtcttatgtattatggtttgtgggt 12200652  T
Q  277 atttggagaatttc 290  Q
    ||||||||||||||    
T  12200653 atttggagaatttc 12200666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 290
Target Start/End: Original strand, 12444981 - 12445094
Alignment:
Q  177 tggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaattatggtttgtgggt 276  Q
    |||| |||||||||| |||||||||||| |||||||||||| ||||||| | ||||||  |||||||  || ||| || | |  ||||||||||||||||    
T  12444981 tggaagttattgttgcctttgatttaatggaaaggaaattggtagagatacttcttccagatgatttcaaccatggtcttatgtattatggtttgtgggt 12445080  T
Q  277 atttggagaatttc 290  Q
    ||||||||||||||    
T  12445081 atttggagaatttc 12445094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 289
Target Start/End: Original strand, 15349100 - 15349206
Alignment:
Q  183 ttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaattatggtttgtgggtatttgg 282  Q
    |||||||||  ||||||||||  ||||||||| |||| |||||||||| |||  ||||||||||  ||||| |||   ||| |||||||||||| |||||    
T  15349100 ttattgttgcatttgatttaaacgaaaggaaactgtttgagatgcctcctccagatgattttgaacatgatgctggtgattgtggtttgtgggtctttgg 15349199  T
Q  283 agaattt 289  Q
     ||||||    
T  15349200 cgaattt 15349206  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 12195382 - 12195454
Alignment:
Q  30 atttggaacttttctcattgagagataatgcgtggaatcaaattgaggatcctcactttacttatttcaatgc 102  Q
    |||| ||| ||||||||||||||||||||  ||||||| ||||||| | ||||||| | |||||||| |||||    
T  12195382 atttagaatttttctcattgagagataataagtggaatgaaattgaaggtcctcacatcacttatttgaatgc 12195454  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 12439810 - 12439882
Alignment:
Q  30 atttggaacttttctcattgagagataatgcgtggaatcaaattgaggatcctcactttacttatttcaatgc 102  Q
    |||| ||| ||||||||||||||||||||  ||||||| ||||||| | ||||||| | |||||||| |||||    
T  12439810 atttagaatttttctcattgagagataataagtggaatgaaattgaaggtcctcacatcacttatttgaatgc 12439882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 290
Target Start/End: Complemental strand, 11015347 - 11015222
Alignment:
Q  165 atgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaatta 264  Q
    ||||||||||||||||||||||||||| |||||||||| | ||||||||| | || ||||||| | ||||  ||| |||||||||||| ||| || |||     
T  11015347 atgatttatcaatggatgttattgttggctttgatttagtggaaaggaaacttttggagatgcattttccagatggttttgactatgaacctatagattg 11015248  T
Q  265 tggtttgtgggtatttggagaatttc 290  Q
    || ||||||| |||||||||||||||    
T  11015247 tgatttgtggatatttggagaatttc 11015222  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 165 - 290
Target Start/End: Complemental strand, 11005784 - 11005659
Alignment:
Q  165 atgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaatta 264  Q
    ||||||| ||||||||||||||||||| |||||||||| | ||||||||| | |||||||||||| ||||  ||| ||||||  |||| ||| || |||     
T  11005784 atgatttgtcaatggatgttattgttggctttgatttagtggaaaggaaacttttagagatgccttttccatatggttttgatcatgaacctatagattg 11005685  T
Q  265 tggtttgtgggtatttggagaatttc 290  Q
    || ||||||| |||||||||||||||    
T  11005684 tgatttgtggatatttggagaatttc 11005659  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 290
Target Start/End: Complemental strand, 11024360 - 11024234
Alignment:
Q  164 aatgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaatt 263  Q
    |||||||||||||||||||||||| ||| |||||||||| | |||||| || | || ||||||||| ||||  ||| ||||||  |||| ||| |  |||    
T  11024360 aatgatttatcaatggatgttattattgcctttgatttagtggaaagggaacttttggagatgccttttccagatggttttgatcatgaacctatggatt 11024261  T
Q  264 atggtttgtgggtatttggagaatttc 290  Q
     || ||||||| |||||||||||||||    
T  11024260 gtgatttgtggatatttggagaatttc 11024234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 290
Target Start/End: Complemental strand, 47451767 - 47451637
Alignment:
Q  160 tcgtaatgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgta 259  Q
    |||| ||||| |||| ||| ||||||||| ||  ||||||||||| ||||| ||||| |||||  ||  | | ||  ||||||||||| |||| |||       
T  47451767 tcgtcatgatatatccatgaatgttattgctgcatttgatttaatggaaagaaaatttttagatgtgaatttgccagatgattttgaccatgaacctacc 47451668  T
Q  260 aattatggtttgtgggtatttggagaatttc 290  Q
    |||| ||||||||||||||||||||||||||    
T  47451667 aattgtggtttgtgggtatttggagaatttc 47451637  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 290
Target Start/End: Complemental strand, 37826908 - 37826727
Alignment:
Q  115 caaagtaaggtcattctttaatggggcctttcattgggttgctcgtcgtaatgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaa 214  Q
    ||||||| ||||| |||| ||||||||| |||||||| |  ||  ||||  ||||| | || || || ||||||||| |||| ||||||| |||||||||    
T  37826908 caaagtagggtcactcttaaatggggccattcattggttaacttatcgtcgtgattcaccactgcatcttattgttgcctttaatttaatggaaaggaaa 37826809  T
Q  215 ttgttagagatgcctcttcc----cca--tgattttgactatgatcctgtaaattatggtttgtgggtatttggagaatttc 290  Q
     |||||||||| ||  ||||    |||  ||||||| || ||||||||  | ||| ||||||||||||||||||||||||||    
T  37826808 ctgttagagatacccgttccagttccagatgattttcacgatgatcctccatattttggtttgtgggtatttggagaatttc 37826727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 290
Target Start/End: Complemental strand, 43596255 - 43596162
Alignment:
Q  197 gatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactatgatcctgtaaattatggtttgtgggtatttggagaatttc 290  Q
    |||||||| ||||| ||| | |||||||||| | ||||| ||| ||||||||||||||||  ||||| || | ||||||||||||| |||||||    
T  43596255 gatttaattgaaagcaaactcttagagatgctttttcccgatggttttgactatgatcctaaaaattgtgatatgtgggtatttggggaatttc 43596162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 49044050 - 49044002
Alignment:
Q  166 tgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaa 214  Q
    ||||||||||||| |||||||||||| |||||||||||| |||||||||    
T  49044050 tgatttatcaatgaatgttattgttgcctttgatttaattgaaaggaaa 49044002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 7765850 - 7765920
Alignment:
Q  177 tggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgac 247  Q
    ||||||| ||||||| |||||||||||  ||||||| |||||| ||||||||||||||  ||||| |||||    
T  7765850 tggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgac 7765920  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 7773675 - 7773621
Alignment:
Q  180 atgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttcc 234  Q
    |||| ||||||  |||||||||||| |||||||||||||| ||||||||||||||    
T  7773675 atgtaattgtttcctttgatttaatggaaaggaaattgtttgagatgcctcttcc 7773621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 7786672 - 7786742
Alignment:
Q  177 tggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgac 247  Q
    ||||||| ||||||| |||||||||||  ||||||| |||||| ||||||||||||||  ||||| |||||    
T  7786672 tggatgtcattgttggctttgatttaacggaaaggatattgtttgagatgcctcttccaaatgatgttgac 7786742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 290
Target Start/End: Original strand, 7877970 - 7878070
Alignment:
Q  193 ctttgatttaatagaaaggaaattgttagagatgcctcttccccatgattttgactat-gatcct--gtaaattatggtttgtgggtatttggagaattt 289  Q
    |||||||||||| |||| ||||||||| ||||||||||||||  || || ||||| || || | |  ||| ||| |||||||||||||||||||||||||    
T  7877970 ctttgatttaatggaaaagaaattgtttgagatgcctcttccaaataatgttgaccatagagcattagtacattctggtttgtgggtatttggagaattt 7878069  T
Q  290 c 290  Q
    |    
T  7878070 c 7878070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 48147576 - 48147506
Alignment:
Q  164 aatgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttcc 234  Q
    ||||||||| ||| |||||||||| |||  ||||||||||| ||||||| | | |||||||||||| ||||    
T  48147576 aatgatttagcaagggatgttattattgcatttgatttaatggaaaggagacttttagagatgccttttcc 48147506  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 48705276 - 48705198
Alignment:
Q  133 taatggggcctttcattgggttgctcgtcgtaatgatttatcaatggatgttattgttgtctttgatttaatagaaagg 211  Q
    |||||||||  |||||||| | |||  |||| ||||||||  || |||||||||||||| |||||||||||| ||||||    
T  48705276 taatggggctattcattggttggcttatcgtcatgatttacgaaaggatgttattgttgcctttgatttaatggaaagg 48705198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 48898785 - 48898838
Alignment:
Q  23 ttatcacatttggaacttttctcattgagagataatgcgtggaatcaaattgag 76  Q
    |||||||| |||||  ||||||||||||||||||||| ||||||  ||||||||    
T  48898785 ttatcacacttggagtttttctcattgagagataatgtgtggaaggaaattgag 48898838  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 21979477 - 21979424
Alignment:
Q  181 tgttattgttgtctttgatttaatagaaaggaaattgttagagatgcctcttcc 234  Q
    ||||||||||| |||||||||||||||||||||| | || ||||| ||||||||    
T  21979477 tgttattgttgcctttgatttaatagaaaggaaactttttgagatccctcttcc 21979424  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 48883879 - 48883943
Alignment:
Q  23 ttatcacatttggaacttttctcattgagagataatgcgtggaatcaaattgaggatcctcactt 87  Q
    ||||||||||||||   |||||||||||||||||||  ||||||  ||||||||||| |||||||    
T  48883879 ttatcacatttggagtgtttctcattgagagataatatgtggaaagaaattgaggatgctcactt 48883943  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 29696427 - 29696481
Alignment:
Q  160 tcgtaatgatttatcaatggatgttattgttgtctttgatttaatagaaaggaaa 214  Q
    |||||||||| ||||||||  ||||||||||| |||| ||||||| |||||||||    
T  29696427 tcgtaatgatatatcaatgcctgttattgttgcctttcatttaattgaaaggaaa 29696481  T

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