View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_high_10 (Length: 404)
Name: NF1970_high_10
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 27325540 - 27325857
Alignment:
| Q |
11 |
taatactattaatgtttagtacatatcataggaatataggctgaaaaactaacgatattatgcgattcttaatttcaggagcttgaatagtatggccatc |
110 |
Q |
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| T |
27325540 |
taatactattaatgtttagtaaatatattaggaata--ggctgaaaaactaacgatgttatgcgattcttaatttcaggagcttgaatagtatggccatc |
27325637 |
T |
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| Q |
111 |
tccatgatgatacataaacaatgccattctagcaatatttacagctgtatctatgaaacattgagagaaagatgaaccatgagcttctttattcatcttc |
210 |
Q |
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| T |
27325638 |
tccatgatgatacataaacaatgccattctagcaagatttacagctgtatctatgaaacattgagagaaagatgaaccatgagcttctttattcatcttc |
27325737 |
T |
|
| Q |
211 |
ttccactctataaacatcatggacttaacatactcacaagcctgtacttcagaagctccagtttcgttcatgcagcattgaattgactttggaatatcac |
310 |
Q |
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| T |
27325738 |
ttccactctataaacatcatggacttaacatactcacaagcctctacttcagaagctccagtttcgttcatgtaacattgaattgactttggaatatcac |
27325837 |
T |
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| Q |
311 |
ccgtctctttttcacgcttt |
330 |
Q |
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| T |
27325838 |
ctgtctcgttttcacgcttt |
27325857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 67 - 288
Target Start/End: Original strand, 27443370 - 27443591
Alignment:
| Q |
67 |
attatgcgattcttaatttcaggagcttgaatagtatggccatctccatgatgatacataaacaatgccattctagcaatatttacagctgtatctatga |
166 |
Q |
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| T |
27443370 |
attatgcgattttgcatttcagtatcttgaatggtatggccgtctccatgttggtacatgaacattgccactctaccataatttatagcaatatctatga |
27443469 |
T |
|
| Q |
167 |
aacattgagagaaagatgaaccatgagcttctttattcatcttcttccactctataaacatcatggacttaacatactcacaagcctgtacttcagaagc |
266 |
Q |
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| T |
27443470 |
agctatgagagaaagatgaactatgagcttctttattcatcttcttccactctgcatgtatcatggactttacatactcatgagcttcaacttcagaagc |
27443569 |
T |
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| Q |
267 |
tccagtttcgttcatgcagcat |
288 |
Q |
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| T |
27443570 |
tccagtttcgttcatgtagcat |
27443591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 92 - 219
Target Start/End: Original strand, 27406148 - 27406275
Alignment:
| Q |
92 |
cttgaatagtatggccatctccatgatgatacataaacaatgccattctagcaatatttacagctgtatctatgaaacattgagagaaagatgaaccatg |
191 |
Q |
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||||||| | |||||| |||||||| || ||||| |||| ||||| |||| || ||||| ||| |||||||||||| ||||||||||||||||| ||| |
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| T |
27406148 |
cttgaatggaatggccgtctccatgttggtacatgaacattgccactctatcataatttatagcaatatctatgaaactttgagagaaagatgaactatg |
27406247 |
T |
|
| Q |
192 |
agcttctttattcatcttcttccactct |
219 |
Q |
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| T |
27406248 |
aacttctatattcatcttcttccactct |
27406275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 156 - 330
Target Start/End: Complemental strand, 18845590 - 18845416
Alignment:
| Q |
156 |
tgtatctatgaaacattgagagaaagatgaaccatgagcttctttattcatcttcttccactctataaacatcatggacttaacatactcacaagcctgt |
255 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | || ||||||||||||| | ||| || | ||||| |
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| T |
18845590 |
tgtatctatgaaattttgagagaaagatgaactttgagcttctttattcatcttcttccataatgtagacatcatggacttcatataatccctagcctca |
18845491 |
T |
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| Q |
256 |
acttcagaagctccagtttcgttcatgcagcattgaattgactttggaatatcacccgtctctttttcacgcttt |
330 |
Q |
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| T |
18845490 |
atttcagaagctccagtttcgttcatgtagcatttatttaactttggaatatcacctgtctcattttcccgcttt |
18845416 |
T |
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