View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_high_14 (Length: 325)
Name: NF1970_high_14
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 305
Target Start/End: Original strand, 7024501 - 7024792
Alignment:
| Q |
13 |
aatatcaaaagaaaacaaagagaattaatagaaaaagttgcattacttaatacagtcacattactagtagcaaaagagaattaagtcataatctagtaga |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7024501 |
aatatcaaaagaaaacaaagagaattaatagaaaaagttgcattacttaatacagtcacattactagtagcaaaagagaattaagtcataatctagtagc |
7024600 |
T |
|
| Q |
113 |
aaaaccacaaaagtggacaagtcacgttacttaatataagttacatttaaattcaaaataggaaggcattcattcacaacnnnnnnntcatgtctctgct |
212 |
Q |
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| T |
7024601 |
aaaaccacaaaagtggacaagtcacattacttaatataagttacatttaaattcaaaataggaaggcattcattcacaac-aaaaaatcatgtctctgct |
7024699 |
T |
|
| Q |
213 |
tccaacttttctttataagatcttctcctccatcacccttccacaattatgtttgactcatttcctacaacaagtaaacatatcgtcatatct |
305 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7024700 |
tccaacttttccttataagatcttctcctccatcacccttccacaattatgtttgactcatttcctacaacaagtaaacatatagtcatatct |
7024792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 26 - 192
Target Start/End: Complemental strand, 44631283 - 44631117
Alignment:
| Q |
26 |
aacaaagagaattaatagaaaaagttgcattacttaatacagtcacattactagtagcaaaagagaattaagtcataatctagtagaaaaaccacaaaag |
125 |
Q |
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||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
44631283 |
aacaaagagaaataatagaagaagttgcattacttgatacagtcacattactagtagcaggagagaattaagtcataatctagtagcaaaaccacaaaag |
44631184 |
T |
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| Q |
126 |
tggacaagtcacgttacttaatataagttacatttaaattcaaaataggaaggcattcattcacaac |
192 |
Q |
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| T |
44631183 |
tggacaagtcatgttgcttaatataagatacatctaaattcaaaataagaaggcatccattcacaac |
44631117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 200 - 302
Target Start/End: Complemental strand, 44631066 - 44630964
Alignment:
| Q |
200 |
tcatgtctct-gcttccaacttttctttataagatcttctcctccatcacccttc--cacaattatgtttgactcatttcctacaacaagtaaacatatc |
296 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||| |||||||| | |||| |||| |||||||||||||||||||||||||||||||| |
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| T |
44631066 |
tcatgtctcttgcttccaacttttccttataagatcttctcc---atcaccctccaccacagttatttttgactcatttcctacaacaagtaaacatata |
44630970 |
T |
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| Q |
297 |
gtcata |
302 |
Q |
| |
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|||||| |
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| T |
44630969 |
gtcata |
44630964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 36973824 - 36973997
Alignment:
| Q |
13 |
aatatcaaaagaaaacaaagagaattaatagaaaaagttgcattacttaatacagtcacattactagtagcaaaagagaattaagtcataatctagtaga |
112 |
Q |
| |
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||||| || ||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36973824 |
aatattaatagataacaaagagaattaatagaagaagttgca------aatacagtcacattactagtagcagtagagaattaagtcataatctagtagc |
36973917 |
T |
|
| Q |
113 |
aaaaccacaaaagtggacaagtcacgttacttaatataagttacatttaaattcaaaataggaaggcattcattcacaac |
192 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| ||||||||| |
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| T |
36973918 |
aaaaccacaaaagtggacaagtcacattacttaatataagatacatctaaattcaaaataggaaggcatctattcacaac |
36973997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 302
Target Start/End: Original strand, 36974136 - 36974237
Alignment:
| Q |
200 |
tcatgtctctgcttccaacttttctttataagatcttctcctccatcacccttc--cacaattatgtttgactcatttcctacaacaagtaaacatatcg |
297 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||| | || | |||||||||||||||||||||||||| |||||||||| | |
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| T |
36974136 |
tcatgtctctgcttccaacttttccttataagatcttctcc---atcaccctccaccatagttatgtttgactcatttcctacaacatgtaaacatatag |
36974232 |
T |
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| Q |
298 |
tcata |
302 |
Q |
| |
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||||| |
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|
| T |
36974233 |
tcata |
36974237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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