View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1970_high_22 (Length: 257)

Name: NF1970_high_22
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1970_high_22
NF1970_high_22
[»] chr7 (13 HSPs)
chr7 (45-242)||(4845713-4845910)
chr7 (76-214)||(4637082-4637220)
chr7 (91-213)||(4631153-4631275)
chr7 (45-242)||(4711773-4711970)
chr7 (46-214)||(4672928-4673096)
chr7 (85-198)||(4864163-4864276)
chr7 (83-242)||(4667138-4667297)
chr7 (57-197)||(4643949-4644089)
chr7 (39-214)||(4815959-4816134)
chr7 (76-214)||(4783567-4783705)
chr7 (129-242)||(4663191-4663301)
chr7 (85-198)||(4696931-4697044)
chr7 (91-214)||(4653745-4653868)
[»] chr4 (1 HSPs)
chr4 (85-211)||(18925483-18925609)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 45 - 242
Target Start/End: Original strand, 4845713 - 4845910
Alignment:
Q  45 tgacaacagcgaatacgaaattcgaaatgataaagatttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggt 144  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4845713 tgacaacagagaatacgaaattcgtaatgataaagctttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggt 4845812  T
Q  145 atgtttcgcaattgggacaatgattttcctcgttacttggagaaagaatatccaaatagtgtatcaagtgtttatggaagtgatcatctaaactattt 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  4845813 atgtttcgcaattgggacaatgattttcctcgttacttggagaaagaatatccacttagtgtatcaagtttttatggaagtgatcatctaaactattt 4845910  T

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Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 76 - 214
Target Start/End: Complemental strand, 4637220 - 4637082
Alignment:
Q  76 aaagatttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctc 175  Q
    |||| |||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4637220 aaagctttggagatggtttatagagtcaacgttggtcaaaatcaagttccaccaagtgatgatacaggtatgtttcgcaattggggcaatgattttcctc 4637121  T
Q  176 gttacttggagaaagaatatccaaatagtgtatcaagtg 214  Q
     ||||||||||||||| || |||  ||||||||||||||    
T  4637120 tttacttggagaaagagtacccatctagtgtatcaagtg 4637082  T

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Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 4631275 - 4631153
Alignment:
Q  91 gtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgttacttggagaaag 190  Q
    |||||||||||||| | ||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631275 gtttatagagtcaacgctggtgaaaatcaagttccaccaaattatgatacaggtatgtttcgcaattgggacaatgattttcctcgttacttggagaaag 4631176  T
Q  191 aatatccaaatagtgtatcaagt 213  Q
    ||||||||  |||||||||||||    
T  4631175 aatatccacttagtgtatcaagt 4631153  T

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Target: chr7; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 45 - 242
Target Start/End: Original strand, 4711773 - 4711970
Alignment:
Q  45 tgacaacagcgaatacgaaattcgaaatgataaagatttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggt 144  Q
    ||||||||  |||||| ||||||  || || |||| |||||| ||||| ||||||||||| |||||| |||||||||||| |||||   | |||||||||    
T  4711773 tgacaacacggaataccaaattcataacgacaaagctttggaaatggtatatagagtcaacgttggtcaaaatcaagttccaccaaaccaagatacaggt 4711872  T
Q  145 atgtttcgcaattgggacaatgattttcctcgttacttggagaaagaatatccaaatagtgtatcaagtgtttatggaagtgatcatctaaactattt 242  Q
    |||||||| |||||||||| ||||||||||| |||| |||| |||||||||||| | |||||||||| |||||||||||||||||||| |||||||||    
T  4711873 atgtttcgtaattgggacagtgattttcctctttacctggaaaaagaatatccacaaagtgtatcaactgtttatggaagtgatcatccaaactattt 4711970  T

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Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 4673096 - 4672928
Alignment:
Q  46 gacaacagcgaatacgaaattcgaaatgataaagatttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggta 145  Q
    |||||||  |||||| ||||||  || || |||| |||||| ||||||||||||||||| |||||||||| |||||||| |||  |||| ||||| ||||    
T  4673096 gacaacacggaataccaaattcataacgaaaaagctttggaaatggtttatagagtcaacgttggtgaaagtcaagttccaccgggtgacgatactggta 4672997  T
Q  146 tgtttcgcaattgggacaatgattttcctcgttacttggagaaagaatatccaaatagtgtatcaagtg 214  Q
    ||||||| ||||||||||||||||||| | |||||||||||||| ||||||||  ||||||||||||||    
T  4672996 tgtttcgtaattgggacaatgattttcatggttacttggagaaacaatatccacttagtgtatcaagtg 4672928  T

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Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 85 - 198
Target Start/End: Complemental strand, 4864276 - 4864163
Alignment:
Q  85 gagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgttacttgg 184  Q
    |||| |||||||||||||||||| ||||||| |||||||| |||  |||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  4864276 gagacggtttatagagtcaatgtcggtgaaagtcaagttccaccgggtgatgatactggtatgtttcgtaattgggacaatgattttcctcgttacttgg 4864177  T
Q  185 agaaagaatatcca 198  Q
    ||||| ||||||||    
T  4864176 agaaacaatatcca 4864163  T

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Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 83 - 242
Target Start/End: Complemental strand, 4667297 - 4667138
Alignment:
Q  83 tggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgttactt 182  Q
    |||||| ||||||||||||||  |||||||||| |||||||| |||  |||| ||||| ||||||||||| |||||||||||||||||||||||||||||    
T  4667297 tggagacggtttatagagtcagcgttggtgaaagtcaagttccacctggtgacgatactggtatgtttcgtaattgggacaatgattttcctcgttactt 4667198  T
Q  183 ggagaaagaatatccaaatagtgtatcaagtgtttatggaagtgatcatctaaactattt 242  Q
    ||||||| |||||||| | ||  ||||||||  || ||||  |||||||| |||||||||    
T  4667197 ggagaaacaatatccacaaagcatatcaagttattttggacctgatcatccaaactattt 4667138  T

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Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 197
Target Start/End: Complemental strand, 4644089 - 4643949
Alignment:
Q  57 atacgaaattcgaaatgataaagatttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaat 156  Q
    |||| ||||||  ||||| |||| |||||||||||||||||||||||| ||||||  || |||||||| |||||   | ||||||||||||||||| |||    
T  4644089 ataccaaattcttaatgacaaagctttggagatggtttatagagtcaacgttggtcgaattcaagttccaccaaaccaagatacaggtatgtttcgtaat 4643990  T
Q  157 tgggacaatgattttcctcgttacttggagaaagaatatcc 197  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  4643989 tgggacaatgattatcctcgttacttggagaaacaatatcc 4643949  T

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Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 214
Target Start/End: Original strand, 4815959 - 4816134
Alignment:
Q  39 tggttctgacaacagcgaatacgaaattcgaaatgataaagatttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgat 138  Q
    ||||||||||||||  |||||| || |||  ||  | |||| ||| |||| ||||||||||||||| |||||| |||||||||||| | |||   | |||    
T  4815959 tggttctgacaacacggaataccaagttcttaacaacaaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagat 4816058  T
Q  139 acaggtatgtttcgcaattgggacaatgattttcctcgttacttggagaaagaatatccaaatagtgtatcaagtg 214  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||||||||| || |||  ||||||||||||||    
T  4816059 acaggcatgtttcgtaattgggacaatgattctcctcgttacttggagaaagagtacccatctagtgtatcaagtg 4816134  T

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Target: chr7; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 214
Target Start/End: Original strand, 4783567 - 4783705
Alignment:
Q  76 aaagatttggagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctc 175  Q
    |||| ||| |||| ||||||||||||||| |||||| |||||||||||| | |||   | |||||||| |||||||| |||||||||||||||| |||||    
T  4783567 aaagctttagagacggtttatagagtcaacgttggtcaaaatcaagttccagcaaaccaagatacaggcatgtttcgtaattgggacaatgattctcctc 4783666  T
Q  176 gttacttggagaaagaatatccaaatagtgtatcaagtg 214  Q
    |||||||||||||||| || |||  ||||||||||||||    
T  4783667 gttacttggagaaagagtacccatctagtgtatcaagtg 4783705  T

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Target: chr7; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 129 - 242
Target Start/End: Complemental strand, 4663301 - 4663191
Alignment:
Q  129 aagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgttacttggagaaagaatatccaaatagtgtatcaagtgtttatggaagtgat 228  Q
    ||||||||||||||||||||||||  ||||||| ||||||| ||||||||||||||||| |||||||||| | ||||||||||||| || ||||   |||    
T  4663301 aagtgatgatacaggtatgtttcgttattgggaaaatgattctcctcgttacttggagatagaatatccacaaagtgtatcaagtgattttgga---gat 4663205  T
Q  229 catctaaactattt 242  Q
    ||||||||||||||    
T  4663204 catctaaactattt 4663191  T

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Target: chr7; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 85 - 198
Target Start/End: Original strand, 4696931 - 4697044
Alignment:
Q  85 gagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgttacttgg 184  Q
    |||| |||||||||||||||||| ||||  |||||||||| |||||   | ||||| ||||||||||| || ||||||||||||||||||||||||||||    
T  4696931 gagacggtttatagagtcaatgtgggtggcaatcaagttccaccaaaccaagatactggtatgtttcgtaactgggacaatgattttcctcgttacttgg 4697030  T
Q  185 agaaagaatatcca 198  Q
    ||||| ||||||||    
T  4697031 agaaacaatatcca 4697044  T

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Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 4653868 - 4653745
Alignment:
Q  91 gtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgttacttggagaaag 190  Q
    |||||||| ||||| ||||||||||||||||||| |||||     ||||| ||| ||||||| |||||||| || |||| |||||||||||| ||||||     
T  4653868 gtttatagtgtcaacgttggtgaaaatcaagttccaccaaacctagatactggtttgtttcgtaattgggataacgattatcctcgttacttagagaaac 4653769  T
Q  191 aatatccaaatagtgtatcaagtg 214  Q
    ||||||||   |||||||||||||    
T  4653768 aatatccactaagtgtatcaagtg 4653745  T

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Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 85 - 211
Target Start/End: Original strand, 18925483 - 18925609
Alignment:
Q  85 gagatggtttatagagtcaatgttggtgaaaatcaagttcaaccaagtgatgatacaggtatgtttcgcaattgggacaatgattttcctcgttacttgg 184  Q
    |||| ||||||||||||||  |||||||| |||||||||| || |||| |||| ||||||||||||||  |||||||||| |||||||||||||||||||    
T  18925483 gagacggtttatagagtcagcgttggtgataatcaagttccacgaagtaatgacacaggtatgtttcgttattgggacaacgattttcctcgttacttgg 18925582  T
Q  185 agaaagaatatccaaatagtgtatcaa 211  Q
    ||||| ||||||||   ||||||||||    
T  18925583 agaaacaatatccactaagtgtatcaa 18925609  T

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