View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_high_3 (Length: 569)
Name: NF1970_high_3
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 16 - 556
Target Start/End: Complemental strand, 52761244 - 52760707
Alignment:
| Q |
16 |
attagattcaagtttataattcattatttgtttttaccattttaggttggggagtttttctcttcggcacaaattagtgcagcaactcgccagagagagc |
115 |
Q |
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| T |
52761244 |
attagattcaagtttataattccttatttgtttttaccattttaggttggggagtttttctcttcggcacaaattagtgcagcaactcgccagagagagc |
52761145 |
T |
|
| Q |
116 |
ttgaagttcaacaaccatctgttgaagggtctattgactgtccattattaatggaacaagtataccctacaactttgtagtttatattcataatgtcatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52761144 |
ttgaagttcaacaaccatctgttgaagggtctattgactgtccattattaatggaacaagtataccctacaactttgtagtttatattcataatgtcatt |
52761045 |
T |
|
| Q |
216 |
tgttgatgatgcttagaaattttatgacttgtaggagacgacagcatatccagtaaagcagataaaattggggtttataaccggtcttgttactagggaa |
315 |
Q |
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| T |
52761044 |
tattgatgatgcttagaaattttatgacttgtaggagacgacagcatatccagtaaagcagataaaattggggtttataaccggtcttgttactagggaa |
52760945 |
T |
|
| Q |
316 |
aaatcaattcctttcgaaagaattctatttcgtgctactagaggaaatgtttttctgaagcaggctgtggttgaacatcatgttctagatcctttgtcgg |
415 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52760944 |
aaatcaattccttttgaaagaattctatttcgtgctactagaggaaatgtttttctgaagcaggctgtggttgaacatcatgttctagatcctttgtcgg |
52760845 |
T |
|
| Q |
416 |
gagagaaggttactcattctaaagtctctaattaattactttcgttccaattagtaattagtcttctatgctcatcagtcactaatactttcttaatctt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52760844 |
gagagaaggttactcattctaaagtctctaattaattactttcgttccaattag---ttagtcttctatgctcatcagtcactaatactttcttaatctt |
52760748 |
T |
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| Q |
516 |
ctaccttttacaggttcataaaaatgtatttattatatttt |
556 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
52760747 |
ctaccttttacaggttcataaaaatgtatttattatatttt |
52760707 |
T |
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