View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_high_31 (Length: 228)
Name: NF1970_high_31
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 37877121 - 37876904
Alignment:
| Q |
8 |
ggagcagcacagaccaaaacggaaactgcggagatcgaattcatcttaaacatcgtgatttgtttgtcagtgattgacagacggtaggattttcagctag |
107 |
Q |
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| T |
37877121 |
ggagcagccaagaccaaaacggaaactgcggagatcaaattcatcttaaacatcgtgatttgtttgtctgtgattgacagacggtaggattttcagctag |
37877022 |
T |
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| Q |
108 |
ctaggtgtagatatgaggaaacaggattagaattttatttgtaggttacacatgctgc---ttctcggagttacattgtataaaatagtaccagcagtca |
204 |
Q |
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| T |
37877021 |
ctaggtgtagatatgaggaaacaggattagaattttctttgtaggttacacatgctgctggttctcggagttacattgtat-aaatagtaccagcagtca |
37876923 |
T |
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| Q |
205 |
aataatatgggtggcttta |
223 |
Q |
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||||||||||||||||||| |
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| T |
37876922 |
aataatatgggtggcttta |
37876904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 23894560 - 23894777
Alignment:
| Q |
8 |
ggagcagcacagaccaaaacggaaactgcggagatcgaattcatcttaaacatcgtgatttgtttgtcagtgattgacagacggtaggattttcagctag |
107 |
Q |
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|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23894560 |
ggagcagccaagaccaaaacggaaactgcggagatcaaattcatcttaaacatcgtgatttgtttgtctgtgattgacagacggtaggattttcagctag |
23894659 |
T |
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| Q |
108 |
ctaggtgtagatatgaggaaacaggattagaattttatttgtaggttacacatgctgc---ttctcggagttacattgtataaaatagtaccagcagtca |
204 |
Q |
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| T |
23894660 |
ctaggtgtagatatgaggaaacaggattagaattttctttgtaggttacacatgctgctggttctcggagttacattgtat-aaatagtaccagcagtca |
23894758 |
T |
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| Q |
205 |
aataatatgggtggcttta |
223 |
Q |
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||||||||||||||||||| |
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| T |
23894759 |
aataatatgggtggcttta |
23894777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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