View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1970_high_34 (Length: 221)

Name: NF1970_high_34
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1970_high_34
NF1970_high_34
[»] chr4 (12 HSPs)
chr4 (84-189)||(31030393-31030498)
chr4 (84-168)||(31488935-31489019)
chr4 (84-189)||(31020512-31020617)
chr4 (61-165)||(31529197-31529301)
chr4 (87-189)||(31159914-31160016)
chr4 (86-182)||(31496292-31496388)
chr4 (84-183)||(31501460-31501559)
chr4 (70-168)||(31476336-31476434)
chr4 (84-166)||(31482186-31482268)
chr4 (70-167)||(31151038-31151135)
chr4 (1-62)||(31035053-31035110)
chr4 (107-164)||(31162316-31162375)
[»] chr6 (11 HSPs)
chr6 (88-168)||(12781411-12781491)
chr6 (88-164)||(12782166-12782242)
chr6 (88-168)||(12785601-12785681)
chr6 (119-173)||(33060212-33060266)
chr6 (100-184)||(31566474-31566558)
chr6 (121-173)||(33288232-33288284)
chr6 (119-173)||(33361155-33361209)
chr6 (118-184)||(33641985-33642051)
chr6 (100-173)||(33265539-33265612)
chr6 (100-173)||(33274683-33274756)
chr6 (84-173)||(33412575-33412664)
[»] chr8 (1 HSPs)
chr8 (121-166)||(6473158-6473203)
[»] scaffold1749 (1 HSPs)
scaffold1749 (100-184)||(792-876)
[»] scaffold0428 (1 HSPs)
scaffold0428 (100-184)||(9553-9637)


Alignment Details
Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 84 - 189
Target Start/End: Complemental strand, 31030498 - 31030393
Alignment:
Q  84 tcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgc 183  Q
    ||||||||||||||  ||||| |||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| | | || ||||| |||    
T  31030498 tcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattggtacacatccttgactgc 31030399  T
Q  184 agtcaa 189  Q
    ||||||    
T  31030398 agtcaa 31030393  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 31488935 - 31489019
Alignment:
Q  84 tcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaa 168  Q
    ||||||||||||||  ||||| |||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  31488935 tcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattggaa 31489019  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 84 - 189
Target Start/End: Complemental strand, 31020617 - 31020512
Alignment:
Q  84 tcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgc 183  Q
    ||||||||||||||  ||||| |||||||||| |||| |||| ||||||||| |||||||||||||||||||||||||||||| | | || ||||| |||    
T  31020617 tcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactattcttcctcaacttggtgcttgcgagaattggtacacatccttgactgc 31020518  T
Q  184 agtcaa 189  Q
    ||||||    
T  31020517 agtcaa 31020512  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 31529301 - 31529197
Alignment:
Q  61 gaatctgttgcacctgaactgcatcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgag 160  Q
    |||||| | ||||||||||| | |||||| || ||||||||||    ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |    
T  31529301 gaatctatagcacctgaactccttcgtgctatcgaagcctctcggactttcattgttgtcttctcaaacaactatgcttcctcaacttggtgcttgcggg 31529202  T
Q  161 aattg 165  Q
    |||||    
T  31529201 aattg 31529197  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 31160016 - 31159914
Alignment:
Q  87 tgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgcagt 186  Q
    |||||||||||||||  | ||||| |||||  |||||||||||||||||||||||||||| |||||||||||||| |||||| | || ||| | ||||||    
T  31160016 tgcaattgaagcctcaaaggtttttattgtactcttctcaaaaaactatgcttcctcaacatggtgcttgcgagagttggaatacatccttcactgcagt 31159917  T
Q  187 caa 189  Q
    |||    
T  31159916 caa 31159914  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 31496292 - 31496388
Alignment:
Q  86 gtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatg 182  Q
    |||||||||||  |||||| |||||  |||||||||| ||||  |||||||||| |||||||| |||||||| |||||| |||||||| ||||||||    
T  31496292 gtgcaattgaaaactctcaggtttttgttgtggtcttatcaaggaactatgctttctcaacttcgtgcttgcaagaattagaaaagatccttgaatg 31496388  T

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Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 31501460 - 31501559
Alignment:
Q  84 tcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgc 183  Q
    ||||||||||||||  ||| || ||||  ||| |||| ||||||  |||||||||||||||| ||||||||||| |||||| |||||||| |||||||||    
T  31501460 tcgtgcaattgaagattcttatatttttgttgcggtcctctcaaggaactatgcttcctcaatttggtgcttgcaagaattagaaaagatccttgaatgc 31501559  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 31476336 - 31476434
Alignment:
Q  70 gcacctgaactgcatcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaa 168  Q
    |||||||||||   || |||||||||||  ||||| |||||| |||||||||| ||||| ||||| |||| ||||||||||||||||  ||||||||||    
T  31476336 gcacctgaactctttcatgcaattgaagggtctcaggttttcgttgtggtcttgtcaaagaactacgctttctcaacttggtgcttgaaagaattggaa 31476434  T

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Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 31482186 - 31482268
Alignment:
Q  84 tcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattgg 166  Q
    |||||||||||||| ||||||  ||||||| |||||||| || || |  |||||||||||||||||||||||||| |||||||    
T  31482186 tcgtgcaattgaagtctctcagattttcatcgtggtcttgtctaagagttatgcttcctcaacttggtgcttgcgtgaattgg 31482268  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 31151135 - 31151038
Alignment:
Q  70 gcacctgaactgcatcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattgga 167  Q
    ||||||||||| | ||| |||||||||| ||||||  ||||  ||||||| ||||| || |||||||||||||||  |||||| ||||||||||||||    
T  31151135 gcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaagaactatgcttcctcagtttggtgtttgcgagaattgga 31151038  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31035110 - 31035053
Alignment:
Q  1 agttttaataaatatatagttgagacttgagtgagatgtacaacttagcttatcagtaagga 62  Q
    |||||||||||||||||||||||||||    ||||||| |||||||||||||| ||||||||    
T  31035110 agttttaataaatatatagttgagact----tgagatgcacaacttagcttataagtaagga 31035053  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 164
Target Start/End: Complemental strand, 31162375 - 31162316
Alignment:
Q  107 ttttcattgtggtcttctcaaaaaactatgcttcctcaac--ttggtgcttgcgagaatt 164  Q
    ||||||||||||| || || || |||||||||||||||||  ||||||||||| ||||||    
T  31162375 ttttcattgtggtattttctaagaactatgcttcctcaactattggtgcttgcaagaatt 31162316  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 12781491 - 12781411
Alignment:
Q  88 gcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaa 168  Q
    ||||||||||||||||| |||| |||||| || ||||| || ||||||||||||||||||||||| |||||||||||||||    
T  12781491 gcaattgaagcctctcaggtttacattgttgtattctctaagaactatgcttcctcaacttggtgtttgcgagaattggaa 12781411  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 12782242 - 12782166
Alignment:
Q  88 gcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaatt 164  Q
    |||||||||| |||||| ||||||||||| || ||||| |||||||||||||| ||||||||||| |||||||||||    
T  12782242 gcaattgaaggctctcaggttttcattgttgtattctctaaaaactatgcttcttcaacttggtgtttgcgagaatt 12782166  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 12785681 - 12785601
Alignment:
Q  88 gcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaa 168  Q
    |||||||||||||||||  ||| |||||| || ||||| || ||||||||||| ||||||||||| |||||||||||||||    
T  12785681 gcaattgaagcctctcagctttacattgttgtattctctaagaactatgcttcttcaacttggtgtttgcgagaattggaa 12785601  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 33060266 - 33060212
Alignment:
Q  119 tcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagat 173  Q
    |||||||||| ||||||||||||||||| |||||||||| |||||| ||||||||    
T  33060266 tcttctcaaagaactatgcttcctcaacgtggtgcttgcaagaattagaaaagat 33060212  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 31566474 - 31566558
Alignment:
Q  100 tctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgca 184  Q
    |||||||||||  |||  |||||||||| ||| ||||||||||| || |||||||||| |||||| || ||||||  ||||||||    
T  31566474 tctcatgtttttgttgccgtcttctcaagaaattatgcttcctcgacatggtgcttgcaagaattagagaagatttgtgaatgca 31566558  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 33288284 - 33288232
Alignment:
Q  121 ttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagat 173  Q
    ||||||| |||||||||||||||||| ||||||||||  ||||| ||||||||    
T  33288284 ttctcaagaaactatgcttcctcaacatggtgcttgcaggaattagaaaagat 33288232  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 33361209 - 33361155
Alignment:
Q  119 tcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagat 173  Q
    |||| |||| |||||||||||||||||| ||||| |||| |||||| ||||||||    
T  33361209 tcttttcaagaaactatgcttcctcaacatggtgtttgcaagaattagaaaagat 33361155  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 33641985 - 33642051
Alignment:
Q  118 gtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgca 184  Q
    |||||||||| |||||||||||||||||| |||||| | | |||||| || ||||||  ||||||||    
T  33641985 gtcttctcaagaaactatgcttcctcaacatggtgccttcaagaattagagaagatttgtgaatgca 33642051  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 33265612 - 33265539
Alignment:
Q  100 tctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagat 173  Q
    ||||| |||||  ||| |||||| |||| |||||||||||||||||| ||||| || | |||||| ||||||||    
T  33265612 tctcaagtttttgttgcggtcttttcaataaactatgcttcctcaacatggtgtttacaagaattagaaaagat 33265539  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 33274756 - 33274683
Alignment:
Q  100 tctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagat 173  Q
    ||||| |||||  ||| |||||| |||| |||||||||||||||||| ||||| || | |||||| ||||||||    
T  33274756 tctcaagtttttgttgcggtcttttcaataaactatgcttcctcaacatggtgtttacaagaattagaaaagat 33274683  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 33412664 - 33412575
Alignment:
Q  84 tcgtgcaattgaagcctctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagat 173  Q
    ||||||||| ||||  ||||| |||||| | |  ||||| ||||  ||||||||||||||||| |||||| ||| |||||| ||||||||    
T  33412664 tcgtgcaatcgaaggatctcaggttttcgtcgcagtcttttcaaggaactatgcttcctcaacatggtgcctgcaagaattagaaaagat 33412575  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 121 - 166
Target Start/End: Complemental strand, 6473203 - 6473158
Alignment:
Q  121 ttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattgg 166  Q
    |||||||||||||||||||| || || |||||||||| ||||||||    
T  6473203 ttctcaaaaaactatgcttcttccacatggtgcttgcaagaattgg 6473158  T

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Target: scaffold1749 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1749
Description:

Target: scaffold1749; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 876 - 792
Alignment:
Q  100 tctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgca 184  Q
    ||||| |||||| |||  ||||| |||| |||||||||||| ||||| |||||| ||| |||||| || ||||||  ||||||||    
T  876 tctcaggttttcgttgctgtcttatcaagaaactatgcttcttcaacatggtgcctgcaagaattagagaagatttgtgaatgca 792  T

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Target: scaffold0428 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 9637 - 9553
Alignment:
Q  100 tctcatgttttcattgtggtcttctcaaaaaactatgcttcctcaacttggtgcttgcgagaattggaaaagattcttgaatgca 184  Q
    ||||| |||||| |||  ||||| |||| |||||||||||| ||||| |||||| ||| |||||| || ||||||  ||||||||    
T  9637 tctcaggttttcgttgctgtcttatcaagaaactatgcttcttcaacatggtgcctgcaagaattagagaagatttgtgaatgca 9553  T

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