View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_high_5 (Length: 519)
Name: NF1970_high_5
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 7e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 13 - 177
Target Start/End: Complemental strand, 51679325 - 51679161
Alignment:
| Q |
13 |
aaaataattaaataaattaaagagaataactaataatttcaccagtttaccttggtacaagatttcacttaattaatcttatcggttattaatgtattca |
112 |
Q |
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| T |
51679325 |
aaaataattaaataaattaaagagaataactaataatttcaccaatttaccttggtacaagatttcactaaattaatcttatcggttattaatgtattca |
51679226 |
T |
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| Q |
113 |
tcaatattataatatgaatatactaatttgagagtgatatcgctcatagaatatagaaaaaataa |
177 |
Q |
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| T |
51679225 |
tcaatattataatatgaatatattaatttgagagtgatatcgctcatagaatatagaaaaaataa |
51679161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 51679165 - 51679057
Alignment:
| Q |
203 |
aataaccgtgataattattttaatttgagaaggaataaatctccatagaaatggaagaaggcttagaatttcatttatatacttaataaactactaacta |
302 |
Q |
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| T |
51679165 |
aataaccgtggtaattattttaatttgagaaggaataaatcttcatagaaatggaagaaggcttagaatttcatttatatacttaataaactactaacta |
51679066 |
T |
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| Q |
303 |
cctattaca |
311 |
Q |
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||||||||| |
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| T |
51679065 |
cctattaca |
51679057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 453 - 504
Target Start/End: Complemental strand, 51678914 - 51678863
Alignment:
| Q |
453 |
gatagtcatttttgagatcaattaatttttgcagatgtgacactcaattatg |
504 |
Q |
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| T |
51678914 |
gatagtcatttttgagatcaattaatttttgcagatgtgacactcaattatg |
51678863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 39988198 - 39988231
Alignment:
| Q |
278 |
tatatacttaataaactactaactacctattaca |
311 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
39988198 |
tatatatttaataaactactaactacctattaca |
39988231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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