View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_high_9 (Length: 411)
Name: NF1970_high_9
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 12 - 391
Target Start/End: Complemental strand, 4035848 - 4035469
Alignment:
| Q |
12 |
agagacgagttccggcgaagagttgggccaaagctcacagtgacatccctaggagggtttgacacatgctacaatgtcccaatagttgtacccacaataa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4035848 |
agagacgagttccggcgaagagttgggccaaagctcacagtgacatccctaggagggtttgacacatgctacaatgtcccaatagttgtacccacaataa |
4035749 |
T |
|
| Q |
112 |
cattcatattcaccggcatgaacgtgacattgccacaagacaacatccttatacatagcaccgcaggcagcaccacgtgtttggccatggcgggcgcacc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4035748 |
cattcatattcaccggcatgaacgtgacattgccacaagacaacatccttatacatagcaccgcaggcagcaccacgtgtttggccatggcgggcgcacc |
4035649 |
T |
|
| Q |
212 |
cgataatgtgaactcggtgttgaacgtgatagccaacatgcagcaacaaaaccaccgtgtgctctatgatgtccctaactctagggttggtgttgctcgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4035648 |
cgataatgtgaactcggtgttgaacgtgatagccaacatgcagcaacaaaaccaccgtgtgctctatgatgtccctaactctagggttggtgttgctcgt |
4035549 |
T |
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| Q |
312 |
gagctatgtacttaataaaatgatcaatacacataatcttttgtcaatatggcattagaaaagttgtttgggtaatggta |
391 |
Q |
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| T |
4035548 |
gagctatgtacttaataaaatggtcgatacacataatcttttgtcaatatggcattagaaaagttgtttgggtaatggta |
4035469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 396
Target Start/End: Original strand, 13951855 - 13952239
Alignment:
| Q |
12 |
agagacgagttccggcgaagagttgggccaaagctcacagtgacatccctaggagggtttgacacatgctacaatgtcccaatagttgtacccacaataa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13951855 |
agagacgagttccggcgaagagttgggccaaagctcacagtgacatccctaggagggtttgacacatgctacaatgtcccaatagttgtacccacaataa |
13951954 |
T |
|
| Q |
112 |
cattcatattcaccggcatgaacgtgacattgccacaagacaacatccttatacatagcaccgcaggcagcaccacgtgtttggccatggcgggcgcacc |
211 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13951955 |
cattcatattcaccggtatgaacgtgacattgccacaagacaacatccttatacatagcaccgcaggcagcaccacgtgtttggccatggcgggcgcacc |
13952054 |
T |
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| Q |
212 |
cgataatgtgaactcggtgttgaacgtgatagccaacatgcagcaacaaaaccaccgtgtgctctatgatgtccctaactctagggttggtgttgctcgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
13952055 |
cgataatgtgaactcggtgttgaacgtgatagccaacatgcagcaacaaaaccaccgtgttctctatgatgtccctaactctagggttggtgttgctcgt |
13952154 |
T |
|
| Q |
312 |
gagctatgtacttaataaaatgatcaatacacataatcttttgtcaatatggcattagaaaagttgtttgggtaatggtaatatg |
396 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13952155 |
gagctatgtacttaataaaatggtcgatacacataatcttttgtcaatatggcattagaaaagttgtttgggtaatggtaatatg |
13952239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 329
Target Start/End: Original strand, 14705041 - 14705354
Alignment:
| Q |
16 |
acgagttccggcgaagagttgggccaaagctcacagtgacatccctaggagggtttgacacatgctacaatgtcccaatagttgtacccacaataacatt |
115 |
Q |
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||||||| || ||| ||||||| ||||| || | |||||| ||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |
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| T |
14705041 |
acgagtttcgccgacgagttggcccaaaactacctgtgacaaccctaggagggttcgacacatgctacaatgtcccaatagttgtaccaactataacatt |
14705140 |
T |
|
| Q |
116 |
catattcaccggcatgaacgtgacattgccacaagacaacatccttatacatagcaccgcaggcagcaccacgtgtttggccatggcgggcgcacccgat |
215 |
Q |
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| | ||| | |||||||| || ||| | |||| |||||||||| | ||||| |||||||| || ||||| || |||||||||||||| || ||||||||| |
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| T |
14705141 |
cttgttctcaggcatgaatgtaacactaccaccagacaacatcgtcatacacagcaccgccggtagcacaacatgtttggccatggcaggagcacccgat |
14705240 |
T |
|
| Q |
216 |
aatgtgaactcggtgttgaacgtgatagccaacatgcagcaacaaaaccaccgtgtgctctatgatgtccctaactctagggttggtgttgctcgtgagc |
315 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||| || ||||| || ||||| |||||||||||| |
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| T |
14705241 |
aacgtgaactcggtgttgaacgtgatagccaacatgcaacaacaaaaccaccgtgtgctatttgatgtacccaactcaagaattggtattgctcgtgagc |
14705340 |
T |
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| Q |
316 |
tatgtacttaataa |
329 |
Q |
| |
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| || || |||||| |
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| T |
14705341 |
tttgcacctaataa |
14705354 |
T |
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