View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_1 (Length: 673)
Name: NF1970_low_1
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 496
Target Start/End: Complemental strand, 3428932 - 3428449
Alignment:
| Q |
18 |
tcagtcgttgaattaatctaatatatctgcgatcaatgctattagtcgcgtagaattgaaattagagattaagtgtgcatgagttatgagaagaattttt |
117 |
Q |
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| T |
3428932 |
tcagtcgttgaattaatctaatatttatgcgatcaatgttattagtcgcgtagaattgaaattagagattaagtgtggatgagttatgagaagaattttt |
3428833 |
T |
|
| Q |
118 |
atttttaatctaccatcattcggtacactactttttggtctctttatatggtgatagggattggaattttaggagttttcctctcatttcaaggaccagc |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3428832 |
atttttaatctaccatcatttggtacactactttttggtctctttatatggtgatagggattggaattttaggagttttcctctcattccaaggaccagc |
3428733 |
T |
|
| Q |
218 |
caattgcatcttcttcttgaatgtgctctaatttttcgcttgtctcgaaaagcataactagat-ttttaatatgagcataactnnnnnnntaaagtt--- |
313 |
Q |
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| T |
3428732 |
caattgcatcttcttcttgaatgtgctctaatttttcgcttgtctcgaaaagcataactagattttttattatgagcataact--aaaaataaagttatg |
3428635 |
T |
|
| Q |
314 |
---acgcttgaaaatgtccataaagtttaaaaatatttgatgtgtcgtaacacaggtctgaatatgagattctccacttctcaagatttcacgtgtttga |
410 |
Q |
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| T |
3428634 |
aaaatgcttgtaaatgtccgtaaagtttaaagatatttgatgtgtcggaacacaggtctgaatatgagattctccgcttctcaagattttacgtgtttga |
3428535 |
T |
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| Q |
411 |
ttttaactattagactgtttgacaaaattgataattaatttataggcaaaattagataaagaatgacaatttataaactaaattga |
496 |
Q |
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| T |
3428534 |
ttttaactactagattgttagacaaaattgataattaatttataggcaaaattagataaaaaatgacaatttataaactaaattga |
3428449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 493 - 666
Target Start/End: Complemental strand, 3428386 - 3428213
Alignment:
| Q |
493 |
ttgacattagctcgttcatgtttgtgcattaaattctcaaagaattgttgttataaatcaacttttattcttttattttgtgatccccactcttgacaat |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3428386 |
ttgacattagctcgttcatgtttgtgcattaaattctcaaagaattattgttataaatcaacttttattcttttattttgtgatccccactcttgacaat |
3428287 |
T |
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| Q |
593 |
tcaattgtctcatgacatcatcttgtctccttgagatggagagagacatttcaaacgtttgcactcttcatctc |
666 |
Q |
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| T |
3428286 |
tcaattgtctcatgacatcatcttgtctccttgagatggagagagacatttcaaacgtttgcactcttcttctc |
3428213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 492 - 627
Target Start/End: Complemental strand, 3431170 - 3431035
Alignment:
| Q |
492 |
attgacattagctcgttcatgtttgtgcattaaattctcaaagaattgttgttataaatcaacttttattcttttattttgtgatccccactcttgacaa |
591 |
Q |
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|||||||||| ||| |||||| | |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3431170 |
attgacattacctcattcatgctagtgcattatattctcaaagaattattattataaatcaacttttattcttttattttgtgatccccactcttgacaa |
3431071 |
T |
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| Q |
592 |
ttcaattgtctcatgacatcatcttgtctccttgag |
627 |
Q |
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| | |||||||||| ||||||||||||||| ||||| |
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| T |
3431070 |
tgcgattgtctcattacatcatcttgtctcgttgag |
3431035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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