View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1970_low_10 (Length: 462)

Name: NF1970_low_10
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1970_low_10
NF1970_low_10
[»] chr5 (16 HSPs)
chr5 (12-276)||(29710221-29710485)
chr5 (305-441)||(29710483-29710619)
chr5 (68-207)||(30243679-30243818)
chr5 (68-206)||(30339832-30339970)
chr5 (67-207)||(30481989-30482129)
chr5 (69-207)||(30748300-30748438)
chr5 (69-205)||(30434481-30434617)
chr5 (62-206)||(29851957-29852101)
chr5 (61-175)||(4380353-4380467)
chr5 (68-205)||(29870845-29870982)
chr5 (62-207)||(30398671-30398816)
chr5 (77-207)||(17419207-17419337)
chr5 (68-207)||(30058945-30059084)
chr5 (241-352)||(40661617-40661727)
chr5 (144-222)||(30473239-30473317)
chr5 (68-116)||(30678547-30678595)
[»] chr7 (1 HSPs)
chr7 (61-275)||(26705850-26706066)
[»] chr4 (2 HSPs)
chr4 (67-216)||(20303935-20304083)
chr4 (154-207)||(13615449-13615502)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 29710221 - 29710485
Alignment:
Q  12 agagaaaatgcggaaagttatgaaatccctttgaacgataacaattcacgattgcaaaggatttcgatgcttgccggagggtattcctcgcctcacttct 111  Q
    |||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||    
T  29710221 agagaaaatgtggaaagttatgcaatccctttgaacgataacgattcacgattgcaaaggattgcgatgctttccggagggtattgctcgcctcacttct 29710320  T
Q  112 cttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggagggaacaagggaggattaggacaagataacgcatgttccaaaattag 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  29710321 cttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggagggagcaagggaggattaggacaagatagcgcatgttccaaaattag 29710420  T
Q  212 atattagttaggatgaagaagtagagacttttactcttataggcttccatcaccgtcacaaaaac 276  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29710421 acattagttaggatgaagaagtagagacttttactcttatatgcttccatcaccgtcacaaaaac 29710485  T

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Target: chr5; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 305 - 441
Target Start/End: Original strand, 29710483 - 29710619
Alignment:
Q  305 aacattcttatatttggatttcaagtgctcaattgactgagtttttatatattcattgtggttttggacttaatctttgatagtcaaaataactgtattg 404  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29710483 aacattcttatatttggatttcaagtgcttaattgactgagtttttatatattcattgtggttttggacttaatctttgatagtcaaaataactgtattg 29710582  T
Q  405 aaatttcaagttacttcttaagtttagctattaataa 441  Q
    |||||||||||||||||||||||||||||||||||||    
T  29710583 aaatttcaagttacttcttaagtttagctattaataa 29710619  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 68 - 207
Target Start/End: Original strand, 30243679 - 30243818
Alignment:
Q  68 aaggatttcgatgcttgccggagggtattcctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggaggg 167  Q
    ||||||| ||||||||||||||||||||||  | ||||||||||||||||||| || || ||||||| |   |||||||||||||||||||||| |||||    
T  30243679 aaggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttttgaatatttataaatgtccaacattagaggaacgatgcaaagaggg 30243778  T
Q  168 aacaagggaggattaggacaagataacgcatgttccaaaa 207  Q
    |||| ||||||||| |||||||||| | ||| ||||||||    
T  30243779 aacaggggaggattgggacaagatagctcatattccaaaa 30243818  T

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Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 206
Target Start/End: Original strand, 30339832 - 30339970
Alignment:
Q  68 aaggatttcgatgcttgccggagggtattcctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggaggg 167  Q
    ||||||| ||||||||||||||||||||||  | |||||||||||||||| |||||  | |   ||||| | |||||||||||||||||||||| |||||    
T  30339832 aaggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgactatcattaattgcccaacattagaggaacgatgcaaagaggg 30339931  T
Q  168 aacaagggaggattaggacaagataacgcatgttccaaa 206  Q
    |||| ||||||||| |||||||||| | ||| |||||||    
T  30339932 aacaggggaggattgggacaagatagctcatattccaaa 30339970  T

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Target: chr5; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 67 - 207
Target Start/End: Complemental strand, 30482129 - 30481989
Alignment:
Q  67 aaaggatttcgatgcttgccggagggtattcctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggagg 166  Q
    |||||||| ||||||||||||||||||||||  | ||||||||||||||||||||||    |||   | | | |||||||||||||||||||||| ||||    
T  30482129 aaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgacaatttgggaatgcccaacattagaggaacgatgcaaagagg 30482030  T
Q  167 gaacaagggaggattaggacaagataacgcatgttccaaaa 207  Q
    ||||| ||||||||| |||||||||| | ||| ||||||||    
T  30482029 gaacatgggaggattgggacaagatagctcatattccaaaa 30481989  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 69 - 207
Target Start/End: Complemental strand, 30748438 - 30748300
Alignment:
Q  69 aggatttcgatgcttgccggagggtattcctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggaggga 168  Q
    |||||| ||||||||||||||||||||||  | |||||||||||||||| ||||  || |   | ||| | |||||||||||||||||||||| ||||||    
T  30748438 aggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttcttgatatcattgattgcccaacattagaggaacgatgcaaagaggga 30748339  T
Q  169 acaagggaggattaggacaagataacgcatgttccaaaa 207  Q
    ||| ||||||||| |||||||||| | ||| ||||||||    
T  30748338 acatgggaggattgggacaagatagctcatattccaaaa 30748300  T

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Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 69 - 205
Target Start/End: Complemental strand, 30434617 - 30434481
Alignment:
Q  69 aggatttcgatgcttgccggagggtattcctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggaggga 168  Q
    |||||| ||||||||||||||||||||||  | |||||||||||||||| |||||| | |   | ||| | |||||||| ||||||||||||| ||||||    
T  30434617 aggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgtctatcattgattgcccaacattaaaggaacgatgcaaagaggga 30434518  T
Q  169 acaagggaggattaggacaagataacgcatgttccaa 205  Q
    ||| ||||||||| |||||||||| | ||| ||||||    
T  30434517 acaggggaggattgggacaagatagctcatattccaa 30434481  T

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Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 62 - 206
Target Start/End: Complemental strand, 29852101 - 29851957
Alignment:
Q  62 attgcaaaggatttcgatgcttgccggagggtattcctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaa 161  Q
    |||| ||||||||  ||||||||||||||||||||   | |||||||||||||||| ||||||   || | |||| | ||||||||||||||||||||||    
T  29852101 attgtaaaggattgagatgcttgccggagggtattggacacctcacttctcttgagcttctgtcaattaaaaattgcccaacattagaggaacgatgcaa 29852002  T
Q  162 ggagggaacaagggaggattaggacaagataacgcatgttccaaa 206  Q
     | ||||||| | ||||||| |||||||||| | ||| |||||||    
T  29852001 agtgggaacatgtgaggattgggacaagatatctcatattccaaa 29851957  T

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Target: chr5; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 4380467 - 4380353
Alignment:
Q  61 gattgcaaaggatttcgatgcttgccggagggtattcctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgca 160  Q
    |||||||||||||| ||||||||||||||||||||||  | ||||||||||||||||||||||    |   |  || | |||||||||||||||||||||    
T  4380467 gattgcaaaggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgagaatcattggttgcccaacattagaggaacgatgca 4380368  T
Q  161 aggagggaacaaggg 175  Q
    | |||||||||||||    
T  4380367 aagagggaacaaggg 4380353  T

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Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 29870982 - 29870845
Alignment:
Q  68 aaggatttcgatgcttgccggagggtattcctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggaggg 167  Q
    ||||||| ||||||||||||||||||||||  | ||||||||| |||||| |||||    || |   || | |||||||||||||||||||||| |||||    
T  29870982 aaggattgcgatgcttgccggagggtattcgacacctcacttcacttgagcttctggcaattgagggttgcccaacattagaggaacgatgcaaagaggg 29870883  T
Q  168 aacaagggaggattaggacaagataacgcatgttccaa 205  Q
    |||| ||||||||| |||||||||| | ||| ||||||    
T  29870882 aacaggggaggattgggacaagatagctcatattccaa 29870845  T

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Target: chr5; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 207
Target Start/End: Complemental strand, 30398816 - 30398671
Alignment:
Q  62 attgcaaaggatttcgatgcttgccggagggtattcctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaa 161  Q
    |||| |||| ||| |||||||| ||||||||||||   | ||||||||||||||||||||||    |  || ||| | |||||||| |||||||||||||    
T  30398816 attgtaaagaattgcgatgctttccggagggtattagacacctcacttctcttgaggttctgacaatcaatgattgcccaacattaaaggaacgatgcaa 30398717  T
Q  162 ggagggaacaagggaggattaggacaagataacgcatgttccaaaa 207  Q
     ||||||||| ||||||||| |||||||||| | ||| ||||||||    
T  30398716 agagggaacaggggaggattgggacaagatagctcatattccaaaa 30398671  T

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Target: chr5; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 207
Target Start/End: Original strand, 17419207 - 17419337
Alignment:
Q  77 gatgcttgccggagggtattcctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggagggaacaaggga 176  Q
    |||||||||  ||||||||||  | |||||||||||  ||| ||||| |  ||||| | | | |||||||||||||||||||||||||||||||  ||||    
T  17419207 gatgcttgctagagggtattcgacacctcacttctcccgagtttctgaacatttatgactccccaacattagaggaacgatgcaaggagggaaccgggga 17419306  T
Q  177 ggattaggacaagataacgcatgttccaaaa 207  Q
    ||||| |||||||||| | ||| ||||||||    
T  17419307 ggattgggacaagatagctcatattccaaaa 17419337  T

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Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 207
Target Start/End: Complemental strand, 30059084 - 30058945
Alignment:
Q  68 aaggatttcgatgcttgccggagggtattcctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggaggg 167  Q
    ||||||| ||||| ||||||||||||||||  | |||||||||||||||| |||||  | |   |  || |  ||||||| |||||||||||||| || |    
T  30059084 aaggattgcgatgtttgccggagggtattcgacacctcacttctcttgagcttctgactatcattggttgccgaacattaaaggaacgatgcaagaagcg 30058985  T
Q  168 aacaagggaggattaggacaagataacgcatgttccaaaa 207  Q
    |||| ||||||||| |||||||||| | ||| ||||||||    
T  30058984 aacaggggaggattgggacaagatatctcatattccaaaa 30058945  T

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Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 352
Target Start/End: Complemental strand, 40661727 - 40661617
Alignment:
Q  241 tttactcttataggcttccatcaccgtcacaaa-aaccctttggtaggctctctacttcccctacaacattcttatatttggatttcaagtgctcaattg 339  Q
    |||||||||||| |||||||||||| |  |||| |||||||  ||||| ||||||  ||| ||||| | || || | |||||||||||||||||||||||    
T  40661727 tttactcttatatgcttccatcaccattgcaaacaacccttccgtaggttctcta--tcctctacaccctttttgtgtttggatttcaagtgctcaattg 40661630  T
Q  340 actgagtttttat 352  Q
    ||||  |||||||    
T  40661629 actggatttttat 40661617  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 30473317 - 30473239
Alignment:
Q  144 attagaggaacgatgcaaggagggaacaagggaggattaggacaagataacgcatgttccaaaattagatattagttag 222  Q
    |||||| || |||||||||||||||||||||| ||| | ||| |||||| | ||  ||||||||||||| ||| |||||    
T  30473317 attagatgagcgatgcaaggagggaacaagggtggactgggataagatagcacacattccaaaattagacattcgttag 30473239  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 30678547 - 30678595
Alignment:
Q  68 aaggatttcgatgcttgccggagggtattcctcgcctcacttctcttga 116  Q
    ||||||| ||||||||||||||||||||||  | |||||| ||||||||    
T  30678547 aaggattgcgatgcttgccggagggtattcgacacctcacatctcttga 30678595  T

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Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 61 - 275
Target Start/End: Complemental strand, 26706066 - 26705850
Alignment:
Q  61 gattgcaaaggatttcgatgcttgccggagggtattcctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgca 160  Q
    ||||| |||||| | ||||||||||| ||||||||||  | |||||||||||||||| |||||    |||  | || | |||||||||||||||||||||    
T  26706066 gattgtaaaggaatgcgatgcttgccagagggtattcgacacctcacttctcttgagtttctgagaatttggagttgcccaacattagaggaacgatgca 26705967  T
Q  161 aggagggaacaagggaggattaggacaagataacgcatgttccaaaattagatattagttaggatgaagaa--gtagagacttttactcttataggcttc 258  Q
    | ||||||||| ||||||||| |||||||||| | ||| |||||||| || | |||  |||| ||||||||  | |||||| ||||| |||||  || ||    
T  26705966 aagagggaacaggggaggattgggacaagatagctcatattccaaaaataaagatttattagaatgaagaagcgcagagacgtttacccttatctgcctc 26705867  T
Q  259 catcaccgtcacaaaaa 275  Q
     |||||| |||||||||    
T  26705866 aatcaccatcacaaaaa 26705850  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 216
Target Start/End: Original strand, 20303935 - 20304083
Alignment:
Q  67 aaaggatttcgatgcttgccggagggtattcctcgcctcacttctcttgaggttctgtatttttataatttctcaacattagaggaacgatgcaaggagg 166  Q
    ||||||||  |||||||||| || |||||||    ||||||||| ||||||||| ||  | ||||| | | | |||||||| ||||||| ||||||  ||    
T  20303935 aaaggattgagatgcttgcctgaaggtattcgattcctcacttcacttgaggttttgagtatttatgaatgcccaacattaaaggaacggtgcaagacgg 20304034  T
Q  167 gaacaagggaggattaggacaagataacgcatgttccaaaattagatatt 216  Q
    ||||| | ||||||| |||||||||| ||||| ||||||||||| |||||    
T  20304035 gaacaggcgaggatt-ggacaagatagcgcatattccaaaattatatatt 20304083  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 207
Target Start/End: Complemental strand, 13615502 - 13615449
Alignment:
Q  154 cgatgcaaggagggaacaagggaggattaggacaagataacgcatgttccaaaa 207  Q
    |||||||||||||||||| |||| || | |||||||||| ||||| ||||||||    
T  13615502 cgatgcaaggagggaacatgggaagactgggacaagatagcgcatattccaaaa 13615449  T

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