View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1970_low_11 (Length: 434)

Name: NF1970_low_11
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1970_low_11
NF1970_low_11
[»] chr6 (29 HSPs)
chr6 (1-334)||(7848024-7848356)
chr6 (1-274)||(14745232-14745505)
chr6 (1-195)||(31500172-31500365)
chr6 (58-328)||(10907060-10907332)
chr6 (1-195)||(31494786-31494979)
chr6 (5-184)||(22396664-22396842)
chr6 (1-195)||(31473582-31473769)
chr6 (32-333)||(9190594-9190900)
chr6 (1-91)||(27122144-27122235)
chr6 (31-153)||(8404235-8404356)
chr6 (221-334)||(21038039-21038152)
chr6 (94-195)||(31514699-31514799)
chr6 (91-185)||(31494759-31494852)
chr6 (91-185)||(31500145-31500238)
chr6 (91-185)||(31514672-31514765)
chr6 (31-153)||(21038167-21038288)
chr6 (1-75)||(31514797-31514868)
chr6 (219-334)||(8404091-8404206)
chr6 (31-116)||(10641811-10641895)
chr6 (32-81)||(19548073-19548122)
chr6 (31-153)||(21083788-21083908)
chr6 (115-184)||(31473556-31473625)
chr6 (266-334)||(21083662-21083730)
chr6 (216-334)||(10641555-10641672)
chr6 (54-84)||(14965685-14965715)
chr6 (31-81)||(24621980-24622030)
chr6 (129-185)||(21038172-21038229)
chr6 (32-81)||(28584862-28584910)
chr6 (31-81)||(14980810-14980859)
[»] chr2 (17 HSPs)
chr2 (4-334)||(35922515-35922845)
chr2 (54-326)||(32252351-32252636)
chr2 (1-81)||(23247571-23247652)
chr2 (1-81)||(23907415-23907495)
chr2 (1-76)||(22521360-22521435)
chr2 (139-334)||(27469346-27469546)
chr2 (55-306)||(44586701-44586955)
chr2 (218-329)||(16858545-16858657)
chr2 (129-281)||(13361437-13361590)
chr2 (219-334)||(21246670-21246786)
chr2 (57-154)||(13361402-13361500)
chr2 (55-110)||(23656873-23656928)
chr2 (219-333)||(23656687-23656801)
chr2 (32-103)||(16858360-16858430)
chr2 (32-77)||(18988136-18988180)
chr2 (1-48)||(23246696-23246743)
chr2 (133-185)||(24724917-24724970)
[»] chr4 (19 HSPs)
chr4 (91-329)||(6821126-6821363)
chr4 (1-195)||(6820999-6821192)
chr4 (1-81)||(17418252-17418332)
chr4 (1-81)||(19728781-19728861)
chr4 (1-81)||(3576627-3576707)
chr4 (219-334)||(11936219-11936334)
chr4 (213-306)||(11555774-11555867)
chr4 (31-153)||(15873344-15873465)
chr4 (54-116)||(16285528-16285590)
chr4 (31-116)||(11555552-11555636)
chr4 (32-81)||(18557648-18557697)
chr4 (244-334)||(15873200-15873290)
chr4 (222-333)||(9564090-9564201)
chr4 (295-334)||(12136861-12136900)
chr4 (213-334)||(12228715-12228834)
chr4 (216-283)||(18231742-18231809)
chr4 (54-116)||(12228591-12228653)
chr4 (26-80)||(34635926-34635980)
chr4 (31-130)||(12136653-12136749)
[»] chr7 (11 HSPs)
chr7 (1-94)||(3089568-3089661)
chr7 (129-334)||(37946124-37946336)
chr7 (54-334)||(13477707-13477990)
chr7 (18-80)||(16074828-16074890)
chr7 (213-334)||(22614964-22615084)
chr7 (31-116)||(11655065-11655149)
chr7 (56-130)||(4532194-4532267)
chr7 (32-109)||(20025525-20025601)
chr7 (32-154)||(37946273-37946395)
chr7 (213-334)||(11655248-11655368)
chr7 (129-184)||(4532176-4532232)
[»] scaffold0061 (1 HSPs)
scaffold0061 (7-81)||(18450-18524)
[»] scaffold1043 (1 HSPs)
scaffold1043 (1-81)||(1761-1841)
[»] scaffold0170 (1 HSPs)
scaffold0170 (1-81)||(16877-16957)
[»] chr8 (3 HSPs)
chr8 (1-81)||(17862580-17862660)
chr8 (32-81)||(14422124-14422172)
chr8 (31-81)||(23658101-23658150)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-81)||(141885-141965)
[»] chr5 (10 HSPs)
chr5 (213-334)||(13935442-13935563)
chr5 (1-81)||(19019427-19019507)
chr5 (32-116)||(24614936-24615019)
chr5 (32-116)||(24711334-24711417)
chr5 (32-116)||(24744330-24744413)
chr5 (32-116)||(24757096-24757179)
chr5 (216-334)||(24757320-24757436)
chr5 (32-81)||(22486049-22486097)
chr5 (51-83)||(13935351-13935383)
chr5 (31-81)||(24832507-24832556)
[»] chr1 (2 HSPs)
chr1 (213-328)||(15541142-15541257)
chr1 (32-116)||(43155406-43155490)
[»] scaffold0057 (1 HSPs)
scaffold0057 (54-333)||(40693-40966)
[»] chr3 (16 HSPs)
chr3 (31-153)||(21974783-21974904)
chr3 (31-153)||(21997214-21997335)
chr3 (219-334)||(21974933-21975048)
chr3 (219-334)||(21997364-21997479)
chr3 (31-153)||(13929182-13929303)
chr3 (219-334)||(16362898-16363013)
chr3 (31-150)||(22159358-22159475)
chr3 (31-153)||(16363042-16363161)
chr3 (221-334)||(13927161-13927274)
chr3 (32-81)||(27871251-27871299)
chr3 (58-130)||(13927321-13927392)
chr3 (58-116)||(17790498-17790556)
chr3 (58-116)||(19098940-19098998)
chr3 (295-333)||(22159566-22159604)
chr3 (129-185)||(13929187-13929244)
chr3 (31-81)||(4713344-4713393)
[»] scaffold0094 (1 HSPs)
scaffold0094 (32-81)||(5423-5472)
[»] scaffold1001 (2 HSPs)
scaffold1001 (31-116)||(980-1064)
scaffold1001 (213-334)||(1163-1283)
[»] scaffold0737 (1 HSPs)
scaffold0737 (223-334)||(3938-4049)
[»] scaffold0145 (1 HSPs)
scaffold0145 (54-116)||(12126-12188)
[»] scaffold0092 (1 HSPs)
scaffold0092 (31-110)||(20103-20181)
[»] scaffold0385 (2 HSPs)
scaffold0385 (219-334)||(13921-14037)
scaffold0385 (57-153)||(13798-13892)
[»] scaffold0290 (1 HSPs)
scaffold0290 (32-117)||(14789-14875)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 7848024 - 7848356
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacacctactcatcgttttgccagagt 100  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7848024 attcaccaaatacaaatcatcatcaatttttatgcatataaactcaatcctaagacctatatgaatgtggtaccacacctactcatcgttttgccagagt 7848123  T
Q  101 tatattactgaactttttctcaacatagttgccaaagatatgttattggacttttctcaacatagttgccagaagtatgttactgaaattttctcccaca 200  Q
    ||||||| || |||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  7848124 tatattagtggactttt-ctcaacatagttgctagagatatgttataggacttttctcaacatagttgccagaagtatgttagtgaacttttctcccaca 7848222  T
Q  201 tatgcaagacttatgctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7848223 tatgcaagacttatgctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgca 7848322  T
Q  301 agactccccctaaaatgcacgactctaatgcaag 334  Q
    ||| ||| ||||||||||||||||||||| ||||    
T  7848323 agagtcctcctaaaatgcacgactctaatacaag 7848356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 14745232 - 14745505
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacacctactcatcgttttgccagagt 100  Q
    ||||||||||||||||||||  | || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14745232 attcaccaaatacaaatcattgt-aagttttatgcatatggactcagtcctaagacctatatgaatgtggtaccacacctactcatcattttgccagagt 14745330  T
Q  101 tatattactgaactttttctcaacatagttgccaaagatatgttattggacttttctcaacatagttgccagaagtatgttactgaaattttctcccaca 200  Q
    | |||| ||| || |||||||||||| |||| || |||||||||| || ||||||||||||||||||||||||||||| |||||| | ||||||||| ||    
T  14745331 tttattgctggac-ttttctcaacatggttgtcagagatatgttactgaacttttctcaacatagttgccagaagtatattactggacttttctcccgca 14745429  T
Q  201 tatgcaagac-ttatgctctagactctatatgaacgcaaggaattaaattcgacaagt-attacacatatacacat 274  Q
    |||||||||| ||||||||||||||||||||| ||||| | |||||  ||| |||||| ||| ||| |||||||||    
T  14745430 tatgcaagacattatgctctagactctatatggacgcatgaaattattttcaacaagtaatttcacgtatacacat 14745505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 31500365 - 31500172
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacacctactcatcgttttgccagagt 100  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  31500365 attcaccaaatacagatcatcatgaatttgtatgcatatggactcagtcctaagatctatatgaatgtggtaccacacttactcatcattttgccagagt 31500266  T
Q  101 tatattactgaactttttctcaacatagttgccaaagatatgttattggacttttctcaacatagttgccagaagtatgttactgaaattttctc 195  Q
    ||||||| || || |||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||    
T  31500265 tatattattggac-ttttctcaacatggttgccagagatatgttactggacttttctcaacatagttgccagaaatattttactgaacttttctc 31500172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 58 - 328
Target Start/End: Complemental strand, 10907332 - 10907060
Alignment:
Q  58 tatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatagttgccaaagatatgttattggacttttct 157  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||| || ||||||   | |||||||||||| |  ||||||| |||||||||||    
T  10907332 tatatgaatgtggtaccacacctactcgtcattttgccagagttatattaatggacttttctcccacatagttgccagaagtatgttactggacttttct 10907233  T
Q  158 ca-acatagttgccagaagtatgttactgaaattttctcccacatatgcaagacttatgctctagactctatatgaacgcaaggaattaaattcgacaag 256  Q
    |  ||||| |||||||||||||||||||| | |||| |||||||||||||| |||| ||||||||||||||||||  ||||| |||||||||||||||||    
T  10907232 cccacataattgccagaagtatgttactggacttttttcccacatatgcaatacttgtgctctagactctatatggccgcaaagaattaaattcgacaag 10907133  T
Q  257 tattacacatatacacatagtcacatattccacctatgaatgcaagactccccc-taaaatgcacgactctaa 328  Q
    ||||||| || |||||||| ||| ||| | ||   || | |||||||||||||| ||||||||||||||||||    
T  10907132 tattacaaatgtacacataatcaaataattcataaattactgcaagactcccccttaaaatgcacgactctaa 10907060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 31494979 - 31494786
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacacctactcatcgttttgccagagt 100  Q
    |||||||||||||| |||||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||| ||||||||||||    
T  31494979 attcaccaaatacagatcatcatgaatttgtatgcatatggactcagtcctaagatctatatgaatgtggtaccacacttactcatcattttgccagagt 31494880  T
Q  101 tatattactgaactttttctcaacatagttgccaaagatatgttattggacttttctcaacatagttgccagaagtatgttactgaaattttctc 195  Q
    ||||||| || | ||||||||||||| ||||||| |||||||||| ||||||||||||||||| |||||||||  ||| |||||||| |||||||    
T  31494879 tatattattgga-tttttctcaacatggttgccagagatatgttactggacttttctcaacatggttgccagagatattttactgaacttttctc 31494786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 22396842 - 22396664
Alignment:
Q  5 accaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacacctactcatcgttttgccagagttata 104  Q
    ||||||||||| ||||| |||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22396842 accaaatacaagtcatcgtcaaattttatgcatatggacttagtcctaagacctatatgaatgtggtaccacacctactcatcattttgccagagttata 22396743  T
Q  105 ttactgaactttttctcaacatagttgccaaagatatgttattggacttttctcaacatagttgccagaagtatgttact 184  Q
    |||||  || |||||||||||| ||||||| |||||||||| |||| |||| |||||||| ||||||||  |||||||||    
T  22396742 ttactagac-ttttctcaacatggttgccagagatatgttactggaattttttcaacataattgccagagatatgttact 22396664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 31473769 - 31473582
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacacctactcatcgttttgccagagt 100  Q
    |||||||||||||| ||||||||||||||      ||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  31473769 attcaccaaatacagatcatcatcaattt------atatggactcagtcctaagacctatatgaatgtggtaccacacttactcatcattttgccagagt 31473676  T
Q  101 tatattactgaactttttctcaacatagttgccaaagatatgttattggacttttctcaacatagttgccagaagtatgttactgaaattttctc 195  Q
    |||||||||| || |||||||||||| ||||||| |||||||||| | ||||||||||||||| | |||||||| ||| ||| |||| |||||||    
T  31473675 tatattactggac-ttttctcaacatggttgccagagatatgttactagacttttctcaacatgggtgccagaaatattttaatgaacttttctc 31473582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 32 - 333
Target Start/End: Original strand, 9190594 - 9190900
Alignment:
Q  32 atgcatatggactcaatcctaagacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatagttg 131  Q
    ||||||||||||||  ||||| |||||||||||||||||||||| | |||||||   |||| ||| |||||||||| || ||||||   | |||||||||    
T  9190594 atgcatatggactc--tcctatgacctatatgaatgtggtaccatagctactcacaatttttccaaagttatattagtggacttttctcccacatagttg 9190691  T
Q  132 ccaaagatatgttattggacttttct-caacatagttgccagaagtatgttactgaaattttctcccacat-atgcaagac-ttatgctctagactctat 228  Q
      | || ||||||| ||||||| ||| | ||||| ||||||||||||||||| |||| ||||||||||||| |||||||||   ||| | || |||||||    
T  9190692 ttagaggtatgttactggacttctctcccacataattgccagaagtatgttagtgaacttttctcccacatcatgcaagacaccatgttataaactctat 9190791  T
Q  229 atgaacgcaaggaattaaattcgacaagtattacacatatacacata-----gtcacatattccacctatgaatgcaagactccccctaaaatgcacgac 323  Q
    |||  | ||||||| |||||||  |||||||| ||||||||||| ||      ||||||| ||||| ||| ||||||||||||||| |||||||||||||    
T  9190792 atg-gcacaaggaaataaattcagcaagtattgcacatatacacttaaacacatcacataatccacatattaatgcaagactccccttaaaatgcacgac 9190890  T
Q  324 tctaatgcaa 333  Q
    |||| |||||    
T  9190891 tctattgcaa 9190900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 27122235 - 27122144
Alignment:
Q  1 attcaccaaatacaaatcatcatcaa-tttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacacctactcatcgttt 91  Q
    ||||| ||||||||||||||| || | ||||| |||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  27122235 attcagcaaatacaaatcatcctcgagtttttgtgcatatgaactcagtcctaagacctatatgaatgtggtaccatacctactcatcgttt 27122144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 8404356 - 8404235
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatag- 128  Q
    ||||||||||| |||  |||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||| |||||| || |||||||| |||||     
T  8404356 tatgcatatggtctc--tcctaacgacctatatgattgtggtaccactcctactcatcattttgccagagttatgttactggac-ttttctcatcatagt 8404260  T
Q  129 ttgccaaagatatgttattggactt 153  Q
    |||||| |||||||||| |||||||    
T  8404259 ttgccagagatatgttactggactt 8404235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 334
Target Start/End: Complemental strand, 21038152 - 21038039
Alignment:
Q  221 gactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgcac 320  Q
    ||||||||||||| |||  ||| |||||||||||||||  |||  |||||||||| ||| ||| | ||| ||| |||||||||||| | |||||||||||    
T  21038152 gactctatatgaatgcatagaaataaattcgacaagtaacacaagtatacacatattcaaataattcacatattaatgcaagactctcactaaaatgcac 21038053  T
Q  321 gactctaatgcaag 334  Q
    ||||||||||||||    
T  21038052 gactctaatgcaag 21038039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 195
Target Start/End: Complemental strand, 31514799 - 31514699
Alignment:
Q  94 ccagagttatattactgaactttttctcaacatagttgccaaagatatgttattggacttttctcaacatagttgccagaagtatgttactgaaattttc 193  Q
    |||||||||||||| || |||||| ||||||||  |||||| |||||| ||| ||||||||||||||||| |||||||||| ||| |||||||| |||||    
T  31514799 ccagagttatattattggactttt-ctcaacatgattgccagagatatattactggacttttctcaacatggttgccagaaatattttactgaacttttc 31514701  T
Q  194 tc 195  Q
    ||    
T  31514700 tc 31514699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 31494852 - 31494759
Alignment:
Q  91 ttgccagagttatattactgaactttttctcaacatagttgccaaagatatgttattggacttttctcaacatagttgccagaagtatgttactg 185  Q
    ||||||||| ||| |||||| |||||| |||||||| ||||||| |||||| ||| || |||||||||||||||||||||| |||||| ||||||    
T  31494852 ttgccagagatatgttactggactttt-ctcaacatggttgccagagatattttactgaacttttctcaacatagttgccaaaagtatcttactg 31494759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 31500238 - 31500145
Alignment:
Q  91 ttgccagagttatattactgaactttttctcaacatagttgccaaagatatgttattggacttttctcaacatagttgccagaagtatgttactg 185  Q
    ||||||||| ||| |||||| |||||| |||||||||||||||| | |||| ||| || |||||||||||||||||||||| |||||| ||||||    
T  31500238 ttgccagagatatgttactggactttt-ctcaacatagttgccagaaatattttactgaacttttctcaacatagttgccaaaagtatcttactg 31500145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 31514765 - 31514672
Alignment:
Q  91 ttgccagagttatattactgaactttttctcaacatagttgccaaagatatgttattggacttttctcaacatagttgccagaagtatgttactg 185  Q
    ||||||||| |||||||||| |||||| |||||||| ||||||| | |||| ||| || |||||||||||||||||||||| |||||| ||||||    
T  31514765 ttgccagagatatattactggactttt-ctcaacatggttgccagaaatattttactgaacttttctcaacatagttgccaaaagtatcttactg 31514672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 21038288 - 21038167
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatag- 128  Q
    |||||||||||||||  |||||| ||||||||||| ||||||| ||| | |||||||| ||||||||||||||| |||||| || |||||||| |||||     
T  21038288 tatgcatatggactc--tcctaacgacctatatgattgtggtatcactcttactcatcattttgccagagttatgttactggac-ttttctcatcatagt 21038192  T
Q  129 ttgccaaagatatgttattggactt 153  Q
    |||||| || ||||||| |||||||    
T  21038191 ttgccagaggtatgttactggactt 21038167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 31514868 - 31514797
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtacca 75  Q
    ||||||||||||||    ||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||    
T  31514868 attcaccaaataca---gatcatcaatttgtatgcatatggactcagtcctaagatctatatgaatgtggtacca 31514797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 8404206 - 8404091
Alignment:
Q  219 tagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgc 318  Q
    ||||||||||||||| |||  ||| |||||||||||||||  |||  |||||||||| ||| ||| | ||| ||| |||||||||||| | ||||||||     
T  8404206 tagactctatatgaatgcatagaaataaattcgacaagtaacacaagtatacacatattcaaataattcacatattaatgcaagactctcactaaaatgt 8404107  T
Q  319 acgactctaatgcaag 334  Q
    | ||||||||||||||    
T  8404106 atgactctaatgcaag 8404091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 10641895 - 10641811
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaacttt 116  Q
    |||||||||||||||  |||||  ||||||||||||||||||||||||||||||  || |||| |||||||||| ||||||||||||    
T  10641895 tatgcatatggactc--tcctatcgacctatatgaatgtggtaccacacctacttgtcatttttccagagttatgttactgaacttt 10641811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 19548122 - 19548073
Alignment:
Q  32 atgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  19548122 atgcatatggactcattcctaagacctatatgaatgtggtaccataccta 19548073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 21083908 - 21083788
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatag- 128  Q
    |||||||||||||||  |||||| ||||||||||| ||||||||||| | |||||||| |||||||||| |||  |||||| || |||||||| |||||     
T  21083908 tatgcatatggactc--tcctaacgacctatatgattgtggtaccactcttactcatcattttgccagaatta-gttactggac-ttttctcatcatagt 21083813  T
Q  129 ttgccaaagatatgttattggactt 153  Q
    |||||| || ||||||| |||||||    
T  21083812 ttgccagaggtatgttactggactt 21083788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 31473625 - 31473556
Alignment:
Q  115 ttttctcaacatagttgccaaagatatgttattggacttttctcaacatagttgccagaagtatgttact 184  Q
    |||||||||||| | ||||| | |||| ||| || |||||||||||||||||||||| |||||| |||||    
T  31473625 ttttctcaacatgggtgccagaaatattttaatgaacttttctcaacatagttgccaaaagtatcttact 31473556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 334
Target Start/End: Complemental strand, 21083730 - 21083662
Alignment:
Q  266 tatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgcacgactctaatgcaag 334  Q
    |||||||||| ||| ||| | ||| ||| |||||||||||  | |||||||||||||||||||||||||    
T  21083730 tatacacatattcaaataattcacatattaatgcaagactttcactaaaatgcacgactctaatgcaag 21083662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 334
Target Start/End: Complemental strand, 10641672 - 10641555
Alignment:
Q  216 ctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaa 315  Q
    |||||||||||| ||| |||||   ||||||| |  ||||||||||||  |||||||  | ||||||| ||||| ||  ||||||||| |  ||||||||    
T  10641672 ctctagactctacatggacgcatataattaaaattaacaagtattacaagtatacactca-tcacataatccacatactaatgcaagattttccctaaaa 10641574  T
Q  316 tgcacgactctaatgcaag 334  Q
    ||||||| |||||||||||    
T  10641573 tgcacgaatctaatgcaag 10641555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 84
Target Start/End: Original strand, 14965685 - 14965715
Alignment:
Q  54 gacctatatgaatgtggtaccacacctactc 84  Q
    |||||||||||||||||||||||||||||||    
T  14965685 gacctatatgaatgtggtaccacacctactc 14965715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 24621980 - 24622030
Alignment:
Q  31 tatgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    ||||||||| ||||| |||||| ||| ||||||||||| ||||||||||||    
T  24621980 tatgcatattgactccatcctatgacatatatgaatgtagtaccacaccta 24622030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 21038229 - 21038172
Alignment:
Q  129 ttgccaaagatatgttattggacttttctcaacatag-ttgccagaagtatgttactg 185  Q
    |||||| || ||||||| ||||||||||||| ||||| |||||||| |||||||||||    
T  21038229 ttgccagagttatgttactggacttttctcatcatagtttgccagaggtatgttactg 21038172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 28584910 - 28584862
Alignment:
Q  32 atgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    ||||||||||||||  || ||||||||||||||||||||||| |||||||    
T  28584910 atgcatatggactctttc-taagacctatatgaatgtggtacgacaccta 28584862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 14980859 - 14980810
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacaccta 81  Q
    |||||||||||||||  |||||| ||||||||||| ||||||||||||||||    
T  14980859 tatgcatatggactc--tcctaatgacctatatgattgtggtaccacaccta 14980810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 4 - 334
Target Start/End: Complemental strand, 35922845 - 35922515
Alignment:
Q  4 caccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacacctactcatcgttttgccagagttat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |    
T  35922845 caccaaatacaaatcatcatcaatttttatgcatatggactcagtcctaagacctatatgaatgtggtaccacatctactcatcgttttgccagagtttt 35922746  T
Q  104 attactgaactttttctcaacatagttgccaaagatatgttattggacttttctca-acatagttgccagaagtatgttactgaaattttctcccacata 202  Q
    ||||||| |||||| |||||||||||||||| |||||||||| ||||||||||||  ||||| || ||||||||||||||||| | ||||||||||||||    
T  35922745 attactggactttt-ctcaacatagttgccagagatatgttactggacttttctcccacataatttccagaagtatgttactggacttttctcccacata 35922647  T
Q  203 tgcaagacttatgctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaag 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35922646 tgcaagacttatgctctagactctatatgaacgcaaggaattaaatttgacaagtattacgcatatacacatagtcacatattccacctatgaatgcaag 35922547  T
Q  303 actccccctaaaatgcacgactctaatgcaag 334  Q
    ||||| ||||||||||||||||||||||||||    
T  35922546 actcctcctaaaatgcacgactctaatgcaag 35922515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 54 - 326
Target Start/End: Complemental strand, 32252636 - 32252351
Alignment:
Q  54 gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatagttgccaaagat--atgttattggac 151  Q
    |||||||||| ||||||||||||||||||||| | ||||  |||||||||||||||| ||||||   | |||||||| | | || |  |||||| |||||    
T  32252636 gacctatatgtatgtggtaccacacctactcaccatttttgcagagttatattactggacttttctcccacatagtttcgagaggtgtatgttactggac 32252537  T
Q  152 ttttctca-acatagttgccagaagtatgttactgaaattttctcccacat-atgcaagactt-atgctctagactctatatgaacgcaaggaattaaat 248  Q
    |||||||  ||||| |||||| ||||||||||||  | ||||||||||||| |||||||||   ||||||||||||||||||| || ||||||| |||||    
T  32252536 ttttctcccacataattgccaaaagtatgttactagacttttctcccacatcatgcaagacaccatgctctagactctatatggacacaaggaaataaat 32252437  T
Q  249 tcgacaagtattacacatata--------cacatagtcacatattccacctatgaatgcaagactccccctaaaatgcacgactct 326  Q
    |    |||||||  |||||||        |||||||||||||| ||||| ||| |||||||||||||||||||||||||| |||||    
T  32252436 tgattaagtattgaacatatacacttaagcacatagtcacataatccacatattaatgcaagactccccctaaaatgcacaactct 32252351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 23247652 - 23247571
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaa-tcctaagacctatatgaatgtggtaccacaccta 81  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23247652 attcgccaaatacaaatcatcatcaaattttatgcatatggactcaattcctaagacctatatgaatgtggtaccacaccta 23247571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 23907415 - 23907495
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  23907415 attcaccaaatacaaatcatcgtcaaattttatgcatatggactcattcctaagacctatatgaatgtagtaccacaccta 23907495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 22521360 - 22521435
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccac 76  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  22521360 attcaccaaatacaaatcatcattaatttttatggatatggactcagtcctaagacctttatgaatgtggtaccac 22521435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 139 - 334
Target Start/End: Complemental strand, 27469546 - 27469346
Alignment:
Q  139 tatgttattggacttttctcaacatagttgccagaa-gtatgttactgaaattt-tctcccacat--atgcaagactt-atgctctagactctatatgaa 233  Q
    ||||||| || ||||||||| ||||||||   |||| ||||||||||||| ||| ||||||| ||  ||||||||||| |||||| |||||||| ||| |    
T  27469546 tatgttactgaacttttctctacatagtttttagaaagtatgttactgaactttctctcccaaatcaatgcaagacttcatgctcgagactctaaatgga 27469447  T
Q  234 cgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgcacgactctaatgcaa 333  Q
    |||||  ||||||||||| ||||| ||||||||||||||  |  |||||| | ||  ||| |||||||| ||||| |||| |||||||||||||||||||    
T  27469446 cgcaaataattaaattcggcaagttttacacatatacactcaagcacataatacatatattaatgcaagtctccctctaagatgcacgactctaatgcaa 27469347  T
Q  334 g 334  Q
    |    
T  27469346 g 27469346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 55 - 306
Target Start/End: Complemental strand, 44586955 - 44586701
Alignment:
Q  55 acctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatagtt-gccaaagatatgttattggactt 153  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||  | | ||||| || | || |  ||||||| |||||||    
T  44586955 acctatatgaatgtggtaccacacctactcatcattttgccagagttatgttactggactttcac-ctacataatttgtcagaagtatgttactggactt 44586857  T
Q  154 ttctcaacatagtt-gccagaagtatgttactgaaattttctcccacat--atgcaagactt-atgctctagactctatatgaacgcaaggaattaaatt 249  Q
    |   |  |||| || |||||| |||| |||||| | |||||||  ||||  ||||| |||   ||||||||||||||||||||||| || ||||||||||    
T  44586856 tcacctgcataatttgccagaggtatattactggacttttctcg-acatcaatgcacgacaccatgctctagactctatatgaacgtaaagaattaaatt 44586758  T
Q  250 cgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactc 306  Q
    ||||||||||||||||||| ||| || |||| ||  |||| ||| |||||| |||||    
T  44586757 cgacaagtattacacatatccacttaatcacgtaacccacatattaatgcacgactc 44586701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 16858545 - 16858657
Alignment:
Q  218 ctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactcc-ccctaaaat 316  Q
    ||||||| |||||| |||| | |||||||||||| |||||||||||  ||||||| || ||||||| ||||| ||| ||||||||||||| |||||||||    
T  16858545 ctagactttatatggacgcgaagaattaaattcggcaagtattacatgtatacacttaatcacataatccacatattaatgcaagactcctccctaaaat 16858644  T
Q  317 gcacgactctaat 329  Q
    |||| ||||||||    
T  16858645 gcacaactctaat 16858657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 129 - 281
Target Start/End: Original strand, 13361437 - 13361590
Alignment:
Q  129 ttgccaaagatatgttattggacttttctcaacatag-ttgccagaagtatgttactgaaattttctcccacatatgcaagactt-atgctctagactct 226  Q
    |||||| || ||||||| |||||||||||| |||||| |||||||| |||||||||||  | |||||| | || ||||| ||||| |||||||| |||||    
T  13361437 ttgccagagttatgttactggacttttctctacatagtttgccagaggtatgttactg-gactttctctcccaaatgcacgacttcatgctctacactct 13361535  T
Q  227 atatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcaca 281  Q
    ||||| |||| | |||||||||| ||||| |||||||  ||||||| ||||||||    
T  13361536 atatggacgcgaagaattaaatttgacaattattacaagtatacacttagtcaca 13361590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 21246670 - 21246786
Alignment:
Q  219 tagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccc-cctaaaatg 317  Q
    ||||||||||||||| |||   || ||||||||||||||| |||||||||||||||| ||| ||| | ||| ||| |||||||||||||| |||||||||    
T  21246670 tagactctatatgaatgcatataaataaattcgacaagtaatacacatatacacataatcaaataattcacttattaatgcaagactcccacctaaaatg 21246769  T
Q  318 cacgactctaatgcaag 334  Q
    ||  | |||||||||||    
T  21246770 cataattctaatgcaag 21246786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 13361402 - 13361500
Alignment:
Q  57 ctatatgaatgtggtaccacacctactcatc-gttttgccagagttatattactgaactttttctcaacatag-ttgccaaagatatgttattggacttt 154  Q
    |||||||||||||||||||||||||||| ||  ||||||||||||||| |||||| || ||||||| |||||| |||||| || ||||||| ||||||||    
T  13361402 ctatatgaatgtggtaccacacctactcttcaattttgccagagttatgttactggac-ttttctctacatagtttgccagaggtatgttactggacttt 13361500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 23656928 - 23656873
Alignment:
Q  55 acctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactg 110  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  23656928 acctatatgaatgtggtaccactcctactcatcgtttttccagagttatgttactg 23656873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 333
Target Start/End: Complemental strand, 23656801 - 23656687
Alignment:
Q  219 tagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgc 318  Q
    ||||||||||||||| |||   || ||||| |||||||||  |||  |||||||||| ||| ||| | ||| ||| |||||||||||||| |||||||||    
T  23656801 tagactctatatgaatgcatacaaataaatccgacaagtaacacaagtatacacatattcaaataattcacatattaatgcaagactcccactaaaatgc 23656702  T
Q  319 acgactctaatgcaa 333  Q
    || ||||||||||||    
T  23656701 acaactctaatgcaa 23656687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 16858360 - 16858430
Alignment:
Q  32 atgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttat 103  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||| || || |||||||| ||||||    
T  16858360 atgcatatggactc--tcctaacgacctatatgaatgtggtaccacacctattcgtcattttgccaaagttat 16858430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 18988180 - 18988136
Alignment:
Q  32 atgcatatggactcaatcctaagacctatatgaatgtggtaccaca 77  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  18988180 atgcatatggagtca-tcctaagacctatatgaatgtggtaccaca 18988136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23246743 - 23246696
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaat 48  Q
    |||| ||||| ||||||||||||||| |||||| ||||||||||||||    
T  23246743 attcgccaaacacaaatcatcatcaaattttatacatatggactcaat 23246696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 24724970 - 24724917
Alignment:
Q  133 caaagatatgttattggacttttctcaacatag-ttgccagaagtatgttactg 185  Q
    ||||| ||||||| ||||||||||||| ||||| |||||||| |||||||||||    
T  24724970 caaagttatgttactggacttttctcatcatagcttgccagaggtatgttactg 24724917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 91 - 329
Target Start/End: Original strand, 6821126 - 6821363
Alignment:
Q  91 ttgccagagttatattactgaactttttctcaacatagttgccaaagatatgttattggacttttctcaacatagttgccagaagtatgttactgaaatt 190  Q
    ||||||||| ||| |||||| |||||| ||||||||||||| || |  ||||||| |||||||||||||||||||||| |||||||||||||||| ||||    
T  6821126 ttgccagagatatgttactggactttt-ctcaacatagttgtcagaagtatgttactggacttttctcaacatagttgtcagaagtatgttactggaatt 6821224  T
Q  191 ttctcccacatatgcaagacttatgctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacc 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6821225 ttctcccacatatgcaagacttatgctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacc 6821324  T
Q  291 tatgaatgcaagactccccctaaaatgcacgactctaat 329  Q
    |||||||||||||||||||||||||||||||||||||||    
T  6821325 tatgaatgcaagactccccctaaaatgcacgactctaat 6821363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 6820999 - 6821192
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacacctactcatcgttttgccagagt 100  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6820999 attcaccaaatacaaatcatcatcaatttttatgcatatttactcaatcctaagacctatatgaatgtggtaccacacctactcatcgttttgccagagt 6821098  T
Q  101 tatattactgaactttttctcaacatagttgccaaagatatgttattggacttttctcaacatagttgccagaagtatgttactgaaattttctc 195  Q
    |||||||||| || |||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| | |||||||    
T  6821099 tatattactggac-ttttctcaacatagttgccagagatatgttactggacttttctcaacatagttgtcagaagtatgttactggacttttctc 6821192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 17418252 - 17418332
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17418252 attcaccaaatacaaatcatcgtcaaattttatgcatatggactcagtcctaagacctatatgaatgtggtaccacaccta 17418332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 19728861 - 19728781
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    |||||||||| | |||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19728861 attcaccaaacagaaatcatcgtcaaattttatgcatgtggactcaatcctaagacctatatgaatgtggtaccacaccta 19728781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 3576707 - 3576627
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    |||||||||||||| ||||||||||| ||||||||||||||||  | | ||||||||||||||||||||||||||||||||    
T  3576707 attcaccaaatacatatcatcatcaaattttatgcatatggacgtagtactaagacctatatgaatgtggtaccacaccta 3576627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 11936219 - 11936334
Alignment:
Q  219 tagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgc 318  Q
    |||||||||||||||| ||||||| |||||| | ||| |||||||||| ||||| ||  |||||| ||||| ||| |||| ||||| |||||||| ||||    
T  11936219 tagactctatatgaacacaaggaaataaattgggcaaatattacacatgtacacttaagcacataatccacatattaatgtaagacaccccctaagatgc 11936318  T
Q  319 acgactctaatgcaag 334  Q
    ||||||||||||||||    
T  11936319 acgactctaatgcaag 11936334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 11555774 - 11555867
Alignment:
Q  213 atgctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactc 306  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||||||| ||||||| || |||||||  |||| ||| |||||| |||||    
T  11555774 atgctctagactcaatatgaacgtaaagaattaaattcgacaagtattacacgtatacacttaatcacataacccacatattaatgcacgactc 11555867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 15873465 - 15873344
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatag- 128  Q
    |||||||||||||||  |||||| ||||||||||| ||||||||||| |||||||||| ||| ||||||||||| |||||| || |||||||| |||||     
T  15873465 tatgcatatggactc--tcctaacgacctatatgattgtggtaccactcctactcatcatttagccagagttatgttactggac-ttttctcatcatagt 15873369  T
Q  129 ttgccaaagatatgttattggactt 153  Q
    ||| || |||||||||| |||||||    
T  15873368 ttgtcagagatatgttactggactt 15873344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 16285590 - 16285528
Alignment:
Q  54 gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaacttt 116  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| |||||    
T  16285590 gacctatatgaatgtggtaccacacctactcgtcattttgccagagttatgttactggacttt 16285528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 11555552 - 11555636
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaacttt 116  Q
    |||||||||||||||  |||||  |||| ||||||||| ||||||||||||||||||| ||||||||||||||| |||||| |||||    
T  11555552 tatgcatatggactc--tcctattgaccaatatgaatgcggtaccacacctactcatcattttgccagagttatgttactggacttt 11555636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 18557697 - 18557648
Alignment:
Q  32 atgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  18557697 atgcatatggactcattcctaagacctatatgaatgtggtaccataccta 18557648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 334
Target Start/End: Complemental strand, 15873290 - 15873200
Alignment:
Q  244 taaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgcacgactctaatgcaag 334  Q
    |||||||||||||||  |||  |||||||||| ||| ||  | ||| ||| |||||||||||| | |||||||||||||||||||||||||    
T  15873290 taaattcgacaagtaacacaagtatacacatattcaaatcattcacatattaatgcaagactctcactaaaatgcacgactctaatgcaag 15873200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 333
Target Start/End: Original strand, 9564090 - 9564201
Alignment:
Q  222 actctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgcacg 321  Q
    |||||||||||| |||   || |||||||||||||||  | || ||| |||||| ||| ||  | ||| ||| |||| |||||||||||||| |||||||    
T  9564090 actctatatgaatgcataaaaataaattcgacaagtaacagacgtatgcacatattcaaatgattcacatattaatgtaagactccccctaatatgcacg 9564189  T
Q  322 actctaatgcaa 333  Q
    ||||||||||||    
T  9564190 actctaatgcaa 9564201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 334
Target Start/End: Original strand, 12136861 - 12136900
Alignment:
Q  295 aatgcaagactccccctaaaatgcacgactctaatgcaag 334  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  12136861 aatgcaagactcccactaaaatgcacgactctaatgcaag 12136900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 213 - 334
Target Start/End: Original strand, 12228715 - 12228834
Alignment:
Q  213 atgctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactcccccta 312  Q
    ||||| ||||||||| ||||| |||   || |||||||||||||||  |||  |||||||||| ||| ||| | ||| ||| |||||||||||  | |||    
T  12228715 atgctatagactctacatgaatgcataaaaataaattcgacaagtaaaacaagtatacacatattcaaataattcacatattaatgcaagact--cacta 12228812  T
Q  313 aaatgcacgactctaatgcaag 334  Q
    |||||||| |||||||||||||    
T  12228813 aaatgcacaactctaatgcaag 12228834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 18231809 - 18231742
Alignment:
Q  216 ctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacata 283  Q
    ||||| |||||||||||||| || ||||| |||||||||| |||||||  ||||||| || |||||||    
T  18231809 ctctaaactctatatgaacgtaaagaattcaattcgacaaatattacatgtatacacttaatcacata 18231742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 12228591 - 12228653
Alignment:
Q  54 gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaacttt 116  Q
    |||||||||||||||||||| || ||||||| |  |||| |||||||||| |||||| |||||    
T  12228591 gacctatatgaatgtggtacaacgcctactcgttatttttccagagttatgttactggacttt 12228653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 34635980 - 34635926
Alignment:
Q  26 atttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacacct 80  Q
    |||| |||| |||| ||||  |||||||||||||||| |||||||||||||||||    
T  34635980 atttgtatgtatatagacttcatcctaagacctatataaatgtggtaccacacct 34635926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 130
Target Start/End: Original strand, 12136653 - 12136749
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatagt 129  Q
    |||||||||||| ||  |||||| ||||||||||| ||||||||||  | |||||||| |||| |||||||||| ||||| || ||||||||| ||||||    
T  12136653 tatgcatatggaatc--tcctaacgacctatatgattgtggtaccagtcatactcatcatttt-ccagagttatgttact-aaatttttctcatcatagt 12136748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3089661 - 3089568
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacacctactcatcgttttgc 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||    
T  3089661 attcaccaaatacaaatcatcatcaatttttatgcatatggactcagacctaagacctatatgaatgtggtaccagacctactcatcgttttgc 3089568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 129 - 334
Target Start/End: Complemental strand, 37946336 - 37946124
Alignment:
Q  129 ttgccaaagatatgttattggacttttctcaacatagtt-gccagaagtatgttactgaaattt-tctcccacat--atgcaagactt-atgctctagac 223  Q
    |||||| || |||||||||||||||||||| |||||||| | |||| |||||||| || | ||| ||||||| ||  ||||||| | | |||||||||||    
T  37946336 ttgccagagttatgttattggacttttctctacatagtttgtcagaggtatgttattggactttctctcccaaatcaatgcaaggcatcatgctctagac 37946237  T
Q  224 tctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacat-attccacctatgaatgcaagactcc-ccctaaaatgcacg 321  Q
    ||||||||||||| |  |||||||||||||||||| | ||| ||||||| || |||||| | ||||| ||| ||||||||||||| ||||||||| |||     
T  37946236 tctatatgaacgcgaataattaaattcgacaagtactgcacgtatacacttaatcacataaatccacatattaatgcaagactcctccctaaaattcaca 37946137  T
Q  322 actctaatgcaag 334  Q
    |||| ||||||||    
T  37946136 actcgaatgcaag 37946124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 334
Target Start/End: Complemental strand, 13477990 - 13477707
Alignment:
Q  54 gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatagtt-gccaaagatatgttattggact 152  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| |||||  | | ||||| || || | || ||||||| ||||||    
T  13477990 gacctatatgaatgtggtaccacacctactcatcatttttccagagttatgttactggactttcac-ctacataatttgctagaggtatgttactggact 13477892  T
Q  153 tttctcaacatagttg-ccagaagtatgttactgaaattttctcccacat--atgcaagactt-atgctctagactctatatgaacgcaaggaattaaat 248  Q
    ||   |  |||| ||  ||||| ||||||||||| | |||||||  ||||  ||||| ||    ||||||||||||||||||||||| || |||||||||    
T  13477891 ttcacctgcataattttccagaggtatgttactggacttttctcg-acatcaatgcatgataccatgctctagactctatatgaacgtaaagaattaaat 13477793  T
Q  249 tcgacaagtattacacatatacacatagtcacatattccaccta-tgaatgcaagactccccctaaaatgcacgactctaatgcaag 334  Q
    ||||||||| |||||  ||||||| || | |||||  |||| || | ||||||||  ||||||||||||| |||||||| |||||||    
T  13477792 tcgacaagt-ttacatgtatacacttaattacataacccacatattaaatgcaagtatccccctaaaatgaacgactctgatgcaag 13477707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 16074890 - 16074828
Alignment:
Q  18 catcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacacct 80  Q
    |||| |||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  16074890 catcgtcaaattttatgcatatggactcagtcctaagacctatatgcatgtggtaccacacct 16074828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 22615084 - 22614964
Alignment:
Q  213 atgctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactcccccta 312  Q
    ||||||||||||||| ||| |||||   ||||||| || ||||||||||||  |||||||  | ||||||| | ||| ||| ||||||||| | ||| ||    
T  22615084 atgctctagactctacatggacgcataaaattaaaatcaacaagtattacaagtatacactca-tcacataattcacatattaatgcaagatttcccata 22614986  T
Q  313 aaatgcacgactctaatgcaag 334  Q
    ||||||||||||||||||||||    
T  22614985 aaatgcacgactctaatgcaag 22614964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 11655065 - 11655149
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaacttt 116  Q
    |||||||||||||||  |||||  ||||||||||||||||||||||||||||||| || |||||||| |||||| ||| || |||||    
T  11655065 tatgcatatggactc--tcctatcgacctatatgaatgtggtaccacacctactcgtcattttgccaaagttatgttattggacttt 11655149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 56 - 130
Target Start/End: Complemental strand, 4532267 - 4532194
Alignment:
Q  56 cctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatagtt 130  Q
    ||||||||| ||||||||||| |||||||||| |||||||| |||||| |||||| || |||||||| |||||||    
T  4532267 cctatatgattgtggtaccactcctactcatcattttgccatagttatgttactggac-ttttctcatcatagtt 4532194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 20025525 - 20025601
Alignment:
Q  32 atgcatatggactcaatccta-agacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattact 109  Q
    ||||||||||||||  ||||| |||||||||| |||||||||||||||||||||||  |||  |||||||||| |||||    
T  20025525 atgcatatggactc--tcctatagacctatattaatgtggtaccacacctactcattatttcaccagagttatgttact 20025601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 37946395 - 37946273
Alignment:
Q  32 atgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcat-cgttttgccagagttatattactgaactttttctcaacatag- 128  Q
    ||||||||||||||  |||||| ||| | ||||||||||||| ||||||||||| | | ||||||||||||||| ||| || || ||||||| ||||||     
T  37946395 atgcatatggactc--tcctaacgacatgtatgaatgtggtaacacacctactcttccattttgccagagttatgttattggac-ttttctctacatagt 37946299  T
Q  129 ttgccaaagatatgttattggacttt 154  Q
    ||| || || ||||||||||||||||    
T  37946298 ttgtcagaggtatgttattggacttt 37946273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 334
Target Start/End: Original strand, 11655248 - 11655368
Alignment:
Q  213 atgctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactcccccta 312  Q
    ||||||||||||||| ||| || ||  |||||||| || ||| ||||||||  |||||||  | ||||||| | ||| ||  ||||||||| |  || ||    
T  11655248 atgctctagactctacatggacacatagaattaaaatcaacatgtattacaagtatacactca-tcacataattcacatactaatgcaagattttccata 11655346  T
Q  313 aaatgcacgactctaatgcaag 334  Q
    ||||||||||||||||||||||    
T  11655347 aaatgcacgactctaatgcaag 11655368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 4532232 - 4532176
Alignment:
Q  129 ttgccaaagatatgttattggacttttctcaacatag-ttgccagaagtatgttact 184  Q
    |||||| || ||||||| ||||||||||||| ||||| |||||||| ||||||||||    
T  4532232 ttgccatagttatgttactggacttttctcatcatagtttgccagaggtatgttact 4532176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 18524 - 18450
Alignment:
Q  7 caaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  18524 caaatacaaatcatcatcaatttttatgcatatggactcagtcctaagacctatatgaatgtcgtaccacaccta 18450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 1841 - 1761
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    |||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1841 attcaccaaacacaaatcatcgtcaaattttatgcatatggactcagtcctaagacctatatgaatgtggtaccacaccta 1761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 16877 - 16957
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  16877 attcaccaaatacaaatcatcgtcaaattttatgcatatggactcatttctaagacctatatgaatgtggtaccacaccta 16957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 17862660 - 17862580
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    |||||||||| |||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17862660 attcaccaaacacaaatcatcgtcaaattttatgcatatggactcagtcctaagacctatatgaatgtggtaccacaccta 17862580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 14422172 - 14422124
Alignment:
Q  32 atgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    |||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  14422172 atgcatatggactcac-cctaagacctatatgaatgtggtaccgcaccta 14422124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 23658101 - 23658150
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacaccta 81  Q
    |||||||||||||||  |||||| ||||||||||| ||||||||||||||||    
T  23658101 tatgcatatggactc--tcctaacgacctatatgattgtggtaccacaccta 23658150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 141885 - 141965
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    |||||||||| |||||||||| |||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  141885 attcaccaaacacaaatcatcgtcaaattttatgcaaatggactcagtcctaagacctatatgaatgtggtaccacaccta 141965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 213 - 334
Target Start/End: Original strand, 13935442 - 13935563
Alignment:
Q  213 atgctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactcccccta 312  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||| ||||  |||||||| ||||||||| ||||| ||| ||||||| |||  |||||    
T  13935442 atgctctagactctatatgaacacaaagaattaaattcgacaagtaatacatgtatacacaaagtcacataatccacatattaatgcaaaactttcccta 13935541  T
Q  313 aaatgcacgactctaatgcaag 334  Q
    |||| ||| ||| ||| |||||    
T  13935542 aaatccacaactgtaaggcaag 13935563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 19019427 - 19019507
Alignment:
Q  1 attcaccaaatacaaatcatcatcaatttttatgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    ||||| || ||||||||||||||||||||||||| ||||||||| |||||||  ||||||||||||||||||| |||||||    
T  19019427 attcatcatatacaaatcatcatcaatttttatgtatatggactaaatcctattacctatatgaatgtggtactacaccta 19019507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 24614936 - 24615019
Alignment:
Q  32 atgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaacttt 116  Q
    ||||||||||||||  |||||| |||||||||||||||  |||||||||||||| || ||||||||||||||| |||||| |||||    
T  24614936 atgcatatggactc--tcctaacgacctatatgaatgtcataccacacctactcgtcattttgccagagttatgttactggacttt 24615019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 24711334 - 24711417
Alignment:
Q  32 atgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaacttt 116  Q
    ||||||||||||||  |||||| |||||||||||||||  |||||||||||||| || ||||||||||||||| |||||| |||||    
T  24711334 atgcatatggactc--tcctaacgacctatatgaatgtcataccacacctactcgtcattttgccagagttatgttactggacttt 24711417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 24744330 - 24744413
Alignment:
Q  32 atgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaacttt 116  Q
    ||||||||||||||  |||||| |||||||||||||||  |||||||||||||| || ||||||||||||||| |||||| |||||    
T  24744330 atgcatatggactc--tcctaacgacctatatgaatgtcataccacacctactcgtcattttgccagagttatgttactggacttt 24744413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 24757096 - 24757179
Alignment:
Q  32 atgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaacttt 116  Q
    ||||||||||||||  |||||| |||||||||||||||  |||||||||||||| || ||||||||||||||| |||||| |||||    
T  24757096 atgcatatggactc--tcctaacgacctatatgaatgtcataccacacctactcgtcattttgccagagttatgttactggacttt 24757179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 334
Target Start/End: Original strand, 24757320 - 24757436
Alignment:
Q  216 ctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaa 315  Q
    ||||||||| ||||||  | ||||||  ||||||| |||||||||  |||||||||| ||  ||||||   ||| ||| |||||||||||| ||||||||    
T  24757320 ctctagactttatatggccacaaggacataaattcaacaagtattgtacatatacacttaaccacatag--cacatattaatgcaagactctccctaaaa 24757417  T
Q  316 tgcacgactctaatgcaag 334  Q
    |||||||||||| ||||||    
T  24757418 tgcacgactctattgcaag 24757436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 22486097 - 22486049
Alignment:
Q  32 atgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    ||||||||||||||  |||||| ||||||||||| |||||||||||||||    
T  22486097 atgcatatggactct-tcctaatacctatatgaaagtggtaccacaccta 22486049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 83
Target Start/End: Original strand, 13935351 - 13935383
Alignment:
Q  51 taagacctatatgaatgtggtaccacacctact 83  Q
    ||||| |||||||||||||||||||||||||||    
T  13935351 taagatctatatgaatgtggtaccacacctact 13935383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 24832556 - 24832507
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacaccta 81  Q
    |||||||||||||||  |||||  ||||||||||||||||||||||||||||    
T  24832556 tatgcatatggactc--tcctatcgacctatatgaatgtggtaccacaccta 24832507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 213 - 328
Target Start/End: Original strand, 15541142 - 15541257
Alignment:
Q  213 atgctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactcccccta 312  Q
    |||||||||||||||||| |||  || |||||||||| |||||||| ||||  ||||||| |||||||||| ||||| ||| |||  |||| ||||||||    
T  15541142 atgctctagactctatattaacttaaagaattaaatttgacaagtaatacatgtatacacctagtcacataatccacatattaattgaagagtcccccta 15541241  T
Q  313 aaatgcacgactctaa 328  Q
    ||||||||||||||||    
T  15541242 aaatgcacgactctaa 15541257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 43155490 - 43155406
Alignment:
Q  32 atgcatatggactcaatcctaagacctatatgaatgtggtaccacacctactcatc-gttttgccagagttatattactgaacttt 116  Q
    |||||||||||| || || || ||||||||||||||||| || ||||||||| |||  ||||||||||||| | |||||| |||||    
T  43155490 atgcatatggaccca-tcttatgacctatatgaatgtggcactacacctacttatcatttttgccagagttgtgttactggacttt 43155406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 333
Target Start/End: Original strand, 40693 - 40966
Alignment:
Q  54 gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatagttgccaaagatatgttattggactt 153  Q
    |||||||||||||||||||||||| ||||| | | |||||| ||||||||||||||| ||||||   | |||||||||| | || |||||||||||||||    
T  40693 gacctatatgaatgtggtaccacatctacttaccattttgctagagttatattactggacttttcacccacatagttgctagaggtatgttattggactt 40792  T
Q  154 ttctcaacatagttgccagaagtatgttactgaaattttctcccacat-atgcaagac-ttatgctctagactctatatgaacgcaaggaattaaattcg 251  Q
    |||||          ||      ||||| ||| | ||||||||||||| |||||||||   |||||||||||||||||||||| ||| ||| || ||||     
T  40793 ttctc----------cc------atgttgctggacttttctcccacatcatgcaagacaccatgctctagactctatatgaacacaatgaaatatattca 40876  T
Q  252 acaagtat--------tacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgcacgactctaatgcaa 333  Q
    ||||||||        ||||| || |||||||||||||||  |||| ||| ||||||||||| || |||||||||||||| ||| |||||    
T  40877 acaagtattggacatatacacttaaacacatagtcacataacccacatattaatgcaagacttcctctaaaatgcacgacactattgcaa 40966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 31 - 153
Target Start/End: Original strand, 21974783 - 21974904
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatag- 128  Q
    |||||||||||||||  |||||| ||||||||||| |||||||| || |||||||||| ||||||||||||||| |||||| || |||||||| |||||     
T  21974783 tatgcatatggactc--tcctaacgacctatatgattgtggtacaactcctactcatcattttgccagagttatgttactggac-ttttctcatcatagt 21974879  T
Q  129 ttgccaaagatatgttattggactt 153  Q
    |||||| |||||||||| |||||||    
T  21974880 ttgccagagatatgttactggactt 21974904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 31 - 153
Target Start/End: Original strand, 21997214 - 21997335
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatag- 128  Q
    |||||||||||||||  |||||| ||||||||||| |||||||| || |||||||||| ||||||||||||||| |||||| || |||||||| |||||     
T  21997214 tatgcatatggactc--tcctaacgacctatatgattgtggtacaactcctactcatcattttgccagagttatgttactggac-ttttctcatcatagt 21997310  T
Q  129 ttgccaaagatatgttattggactt 153  Q
    |||||| |||||||||| |||||||    
T  21997311 ttgccagagatatgttactggactt 21997335  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 21974933 - 21975048
Alignment:
Q  219 tagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgc 318  Q
    ||||||||||||||| |||   || |||||||||||||||  |||  |||||||||| ||| ||| | ||| ||| |||||||||||| | |||||||||    
T  21974933 tagactctatatgaatgcataaaaataaattcgacaagtaacacaagtatacacatattcaaataattcacatattaatgcaagactctcactaaaatgc 21975032  T
Q  319 acgactctaatgcaag 334  Q
    ||||||||||||||||    
T  21975033 acgactctaatgcaag 21975048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 21997364 - 21997479
Alignment:
Q  219 tagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgc 318  Q
    ||||||||||||||| |||   || |||||||||||||||  |||  |||||||||| ||| ||| | ||| ||| |||||||||||| | |||||||||    
T  21997364 tagactctatatgaatgcataaaaataaattcgacaagtaacacaagtatacacatattcaaataattcacatattaatgcaagactctcactaaaatgc 21997463  T
Q  319 acgactctaatgcaag 334  Q
    ||||||||||||||||    
T  21997464 acgactctaatgcaag 21997479  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 13929303 - 13929182
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatag- 128  Q
    |||||||||||||||  | |||| |||||||| || ||||||||||| |||||||||| ||||||||||||||| |||||| || |||||||| |||||     
T  13929303 tatgcatatggactc--ttctaacgacctataagattgtggtaccactcctactcatcattttgccagagttatgttactggac-ttttctcatcatagt 13929207  T
Q  129 ttgccaaagatatgttattggactt 153  Q
    |||||| || ||||||| |||||||    
T  13929206 ttgccagaggtatgttactggactt 13929182  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 334
Target Start/End: Complemental strand, 16363013 - 16362898
Alignment:
Q  219 tagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgc 318  Q
    |||| |||||||||| |||   || ||||||| |||||||  |||  |||||||||| ||| ||| | ||| ||| |||||||||||| | |||||||||    
T  16363013 tagaatctatatgaatgcatataaataaattctacaagtaacacaagtatacacatattcaaataattcacatattaatgcaagactctcactaaaatgc 16362914  T
Q  319 acgactctaatgcaag 334  Q
    ||||||||||||||||    
T  16362913 acgactctaatgcaag 16362898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 150
Target Start/End: Original strand, 22159358 - 22159475
Alignment:
Q  31 tatgcatatggactcaatcctaaga-cctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatag- 128  Q
    |||||||||||||||  |||||| | ||||||||| ||||||||||| | |||||||| ||| ||||||||||| |||||||   |||||||| |||||     
T  22159358 tatgcatatggactc--tcctaacaacctatatgattgtggtaccactcatactcatcatttcgccagagttatgttactga--cttttctcatcatagt 22159453  T
Q  129 ttgccaaagatatgttattgga 150  Q
    |||||| |||||||||| ||||    
T  22159454 ttgccagagatatgttactgga 22159475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 16363161 - 16363042
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatag- 128  Q
    |||||||||| ||||  |||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||  | ||| || || |||||||| |||||     
T  16363161 tatgcatatgtactc--tcctaacgacctatatgattgtggtaccactcctactcatcattttgccagagt--tgttaatggac-ttttctcatcatagt 16363067  T
Q  129 ttgccaaagatatgttattggactt 153  Q
    |||||| |||||||||| |||||||    
T  16363066 ttgccagagatatgttactggactt 16363042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 334
Target Start/End: Complemental strand, 13927274 - 13927161
Alignment:
Q  221 gactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgcac 320  Q
    ||||||||||||| |||   || ||||||| ||||||   |||  |||||||||| ||| ||| | ||| ||| | |||||||||||| |||||||||||    
T  13927274 gactctatatgaatgcatataaataaattctacaagtgacacaagtatacacatattcaaataattcacatattagtgcaagactcccactaaaatgcac 13927175  T
Q  321 gactctaatgcaag 334  Q
     |||||||||||||    
T  13927174 aactctaatgcaag 13927161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 27871299 - 27871251
Alignment:
Q  32 atgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    ||||||||||||||| ||||  ||||||||||||||||||||||||||||    
T  27871299 atgcatatggactca-tcctttgacctatatgaatgtggtaccacaccta 27871251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 13927392 - 13927321
Alignment:
Q  58 tatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatagtt 130  Q
    ||||||| ||||||||||| |||| ||||| ||||||| ||||||| |||||| || |||||||| |||||||    
T  13927392 tatatgattgtggtaccactcctagtcatcattttgccggagttattttactggac-ttttctcatcatagtt 13927321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 17790498 - 17790556
Alignment:
Q  58 tatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaacttt 116  Q
    |||||||||| |||||||||||||||| || |||| ||| |||||| |||||| |||||    
T  17790498 tatatgaatgcggtaccacacctactcgtcatttttccaaagttatgttactggacttt 17790556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 19098940 - 19098998
Alignment:
Q  58 tatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaacttt 116  Q
    |||||||||| |||||||||||||||| || |||| ||| |||||| |||||| |||||    
T  19098940 tatatgaatgcggtaccacacctactcgtcatttttccaaagttatgttactggacttt 19098998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 22159566 - 22159604
Alignment:
Q  295 aatgcaagactccccctaaaatgcacgactctaatgcaa 333  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  22159566 aatgcaagactctcactaaaatgcacgactctaatgcaa 22159604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 13929244 - 13929187
Alignment:
Q  129 ttgccaaagatatgttattggacttttctcaacatag-ttgccagaagtatgttactg 185  Q
    |||||| || ||||||| ||||||||||||| ||||| |||||||| |||||||||||    
T  13929244 ttgccagagttatgttactggacttttctcatcatagtttgccagaggtatgttactg 13929187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 81
Target Start/End: Complemental strand, 4713393 - 4713344
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacaccta 81  Q
    |||||||||||||||  |||||| ||||||||||| ||||||||||||||||    
T  4713393 tatgcatatggactc--tcctaatgacctatatgattgtggtaccacaccta 4713344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 5472 - 5423
Alignment:
Q  32 atgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta 81  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5472 atgcatatggactcattcctaagacctatatgaatgtggtaccacaccta 5423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 980 - 1064
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaacttt 116  Q
    |||||||||||||||  |||||  ||||||||||||||||||||||||||||||| || ||||| |||||||||||| ||| |||||    
T  980 tatgcatatggactc--tcctatcgacctatatgaatgtggtaccacacctactcgtcattttgtcagagttatattcctggacttt 1064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 334
Target Start/End: Original strand, 1163 - 1283
Alignment:
Q  213 atgctctagactctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactcccccta 312  Q
    ||||||||||||||| ||| |||||  ||| |||| || ||||||||||||  ||||||| |  ||||||| |||||  |  ||| ||||| | ||||||    
T  1163 atgctctagactctacatggacgcatagaaataaaatcaacaagtattacaagtatacac-tcatcacataatccacagactaatacaagatttccccta 1261  T
Q  313 aaatgcacgactctaatgcaag 334  Q
    ||||||| |||| |||||||||    
T  1262 aaatgcatgactataatgcaag 1283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 223 - 334
Target Start/End: Complemental strand, 4049 - 3938
Alignment:
Q  223 ctctatatgaacgcaaggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatgcacga 322  Q
    ||||||||||| |||  ||| |||||||||||||||  |||  |||||| ||| ||| ||| | ||| ||| |||| ||||||||| |||||||||||||    
T  4049 ctctatatgaatgcatagaaataaattcgacaagtaacacaattatacaaatattcaaataattcacatattaatgtaagactcccactaaaatgcacga 3950  T
Q  323 ctctaatgcaag 334  Q
    ||||||||||||    
T  3949 ctctaatgcaag 3938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0145 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 12126 - 12188
Alignment:
Q  54 gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaacttt 116  Q
    |||||||||||||||||||||| |||||||| || ||||||||||||||| |||||| |||||    
T  12126 gacctatatgaatgtggtaccaaacctactcgtcattttgccagagttatgttactggacttt 12188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 20181 - 20103
Alignment:
Q  31 tatgcatatggactcaatcctaa-gacctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactg 110  Q
    |||||||||||||||  |||||| ||||| ||||| ||||||||||| |||||||||| ||||||||||||||| ||||||    
T  20181 tatgcatatggactc--tcctaacgacctgtatgattgtggtaccactcctactcatcattttgccagagttatgttactg 20103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 13921 - 14037
Alignment:
Q  219 tagactctatatgaacgca-aggaattaaattcgacaagtattacacatatacacatagtcacatattccacctatgaatgcaagactccccctaaaatg 317  Q
    ||||||||||||||| ||| |  || ||||||||| |||||  |||  |||||||||| ||| ||| | ||| ||| |||| ||||||| | ||||||||    
T  13921 tagactctatatgaatgcataaaaaataaattcgataagtaacacaagtatacacatattcaaataattcacatattaatggaagactctcactaaaatg 14020  T
Q  318 cacgactctaatgcaag 334  Q
    |||||||||||||||||    
T  14021 cacgactctaatgcaag 14037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 13798 - 13892
Alignment:
Q  57 ctatatgaatgtggtaccacacctactcatcgttttgccagagttatattactgaactttttctcaacatag-ttgccaaagatatgttattggactt 153  Q
    |||||||| ||||||||||| |||||||||| ||||||||||||  | ||| || || |||||||| ||||| |||||| |||||||||| |||||||    
T  13798 ctatatgattgtggtaccactcctactcatcattttgccagagt--tgttaatggac-ttttctcatcatagtttgccagagatatgttactggactt 13892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 14875 - 14789
Alignment:
Q  32 atgcatatggactcaatcctaagacctatatgaatgtggtaccacaccta--ctcatcgttttgccagagttatattactgaactttt 117  Q
    ||||||||| ||||| ||||||||||||||||||||| ||||||||||||   ||||||  ||||||||| ||| |||||| ||||||    
T  14875 atgcatatgaactca-tcctaagacctatatgaatgttgtaccacacctatcatcatcgagttgccagagatatgttactggactttt 14789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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