View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1970_low_14 (Length: 333)

Name: NF1970_low_14
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1970_low_14
NF1970_low_14
[»] chr7 (1 HSPs)
chr7 (1-313)||(3087132-3087444)
[»] chr6 (11 HSPs)
chr6 (1-192)||(4299050-4299241)
chr6 (120-188)||(4557956-4558024)
chr6 (1-188)||(4622852-4623039)
chr6 (1-192)||(4626663-4626854)
chr6 (2-188)||(4586349-4586535)
chr6 (2-41)||(4259534-4259573)
chr6 (136-182)||(4612957-4613003)
chr6 (1-57)||(4255985-4256041)
chr6 (3-62)||(3172455-3172514)
chr6 (131-188)||(4571814-4571871)
chr6 (130-182)||(4599011-4599063)
[»] chr8 (2 HSPs)
chr8 (120-188)||(16685519-16685587)
chr8 (2-94)||(20863170-20863262)
[»] chr5 (1 HSPs)
chr5 (3-50)||(24107089-24107136)
[»] scaffold0477 (1 HSPs)
scaffold0477 (139-180)||(3930-3971)
[»] scaffold0288 (1 HSPs)
scaffold0288 (1-62)||(3077-3138)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 3087132 - 3087444
Alignment:
Q  1 gcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattctaaaatgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3087132 gcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattctaaaatgg 3087231  T
Q  101 gatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc-taaaatctcat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||  ||| ||||||    
T  3087232 gatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactctggcgtcagaaactctcat 3087331  T
Q  200 ctgcttgtcataattatagaagaagtcaatagcttactaggaatacactctctaacgctttctaacacacnnnnnnnattggttaacatttatgagtctc 299  Q
     |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||       | ||||| |||||||||||| ||    
T  3087332 atgcttgtcataattatagaagaagtcaatagcttgctaggaatacactctc-aacgctttctaacacacttttttcactggtttacatttatgagtttc 3087430  T
Q  300 gtcaaattatgtgg 313  Q
    || |||||||||||    
T  3087431 gttaaattatgtgg 3087444  T

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Target: chr6 (Bit Score: 76; Significance: 4e-35; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 4299241 - 4299050
Alignment:
Q  1 gcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattctaaaatgg 100  Q
    ||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |||||||| || |||||  || |||||||| |||||||||  |||     
T  4299241 gcattcattacatcactctcaagttcatcataagtattaaaaacaatagcagatgctttgtgaaatctatctgccgcttcaatggcaaattctaccatga 4299142  T
Q  101 gatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtctaaa 192  Q
     ||| ||| ||| |  |  |||||| | |||||  ||||| |||| |||||||||||||||||||||||||||||||| |||| ||||||||    
T  4299141 catcatttggatttgtactccttataaagtcagttagatctttcaatcgaaagttctgcaatcctggaatacagtctagtttgatgtctaaa 4299050  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 4557956 - 4558024
Alignment:
Q  120 ccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 188  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  4557956 ccttataaagtcaggcagatccttcagtcgaaagttctgcaatcctggaatacaatccactttagtgtc 4558024  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 4622852 - 4623039
Alignment:
Q  1 gcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattctaaaatgg 100  Q
    ||||||||  ||||| |||||||||||| |||||| ||||| ||||||||||||| |||||| || |  ||  || ||||||||| ||||||||  |||     
T  4622852 gcattcatcgcatcagtctcaagttcattataagtattaaaaataatagcagaggatttgtgaaatcgttctgccgcttcaatgagaaattctaccatga 4622951  T
Q  101 gatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 188  Q
     ||| ||| | |||  || |||||| | |||||||| |||||| |  |||||||||| |||||| |||| ||||||||||| ||||||    
T  4622952 catcatttggctctgtaatccttataaagtcaggcaaatcctttaaccgaaagttcttcaatccaggaacacagtctacttcggtgtc 4623039  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 4626663 - 4626854
Alignment:
Q  1 gcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattctaaaatgg 100  Q
    |||||||||||||||| |||||||||||| |||||||| || | |||||| || ||| |||| || |||||  || ||||||||| ||||||||  |||     
T  4626663 gcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgtgaaatctatctgccgcttcaatgagaaattctaccatga 4626762  T
Q  101 gatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtctaaa 192  Q
     ||| ||  ||| |     |||||| | || | | || |||||||| ||||||||||||||||| |||||||| |||| |||||||||||||    
T  4626763 catcattaggatttgttgtccttataaagttaagaaggtccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtctaaa 4626854  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 4586349 - 4586535
Alignment:
Q  2 cattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatccc--ccacttcaatgacaaattctaaaatg 99  Q
    |||| ||||||||  |||||||||||||| |||| ||||| |||| ||||||| |||||||  |||  | ||  |  ||||||||| ||||||||  ||     
T  4586349 catttattacatccttctcaagttcatcagaagtattaaaaataaaagcagagtctttgtg--agccgttcctgcgccttcaatgataaattctatgatc 4586446  T
Q  100 ggatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 188  Q
    | ||| ||| ||||   || |||||| | |||||||| |||||| ||||||||||||| |||||||||||||||||| ||||| |||||    
T  4586447 gaatcatttggatcagtaatccttataaagtcaggcaaatcctttagtcgaaagttctccaatcctggaatacagtccactttagtgtc 4586535  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 4259573 - 4259534
Alignment:
Q  2 cattcattacatcactctcaagttcatcataagtgttaaa 41  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4259573 cattcattacatcactctcaagttcatcataagtgttaaa 4259534  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 4613003 - 4612957
Alignment:
Q  136 agatccttcagtcgaaagttctgcaatcctggaatacagtctacttt 182  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||    
T  4613003 agatccttcagtcgaaagttctgcaatccttgaatacagtccacttt 4612957  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4256041 - 4255985
Alignment:
Q  1 gcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggct 57  Q
    ||||||| |||||| ||||||||||||| |||||||||||| | |||||||||||||    
T  4256041 gcattcaatacatcgctctcaagttcattataagtgttaaaaacaatagcagaggct 4255985  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 3172455 - 3172514
Alignment:
Q  3 attcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtg 62  Q
    |||||| ||||||||||||||||||| | ||||||| || | ||||||||| ||||||||    
T  3172455 attcataacatcactctcaagttcattagaagtgttgaaaacaatagcagaagctttgtg 3172514  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 4571814 - 4571871
Alignment:
Q  131 caggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 188  Q
    |||||| |||| ||||||||||||||| || |||||| |||||||| ||||| |||||    
T  4571814 caggcaaatccctcagtcgaaagttcttcagtcctggcatacagtccactttagtgtc 4571871  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 4599011 - 4599063
Alignment:
Q  130 tcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctacttt 182  Q
    ||||| ||||| |||||||||||||| |||| ||| |||||||| ||||||||    
T  4599011 tcaggaagatctttcagtcgaaagttttgcagtccaggaatacaatctacttt 4599063  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 188
Target Start/End: Complemental strand, 16685587 - 16685519
Alignment:
Q  120 ccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 188  Q
    |||||| | |||||||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||    
T  16685587 ccttataaagtcaggcagatccttcagtcgaatattctgcaatcctggaatacagtccactttagtgtc 16685519  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 20863262 - 20863170
Alignment:
Q  2 cattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattcta 94  Q
    ||||||| |||||||||||||| ||||   |||| || || | ||||||||||||| |||| || |||||  | |||||||||| ||||||||    
T  20863262 cattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatctactacttcaatgagaaattcta 20863170  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 24107089 - 24107136
Alignment:
Q  3 attcattacatcactctcaagttcatcataagtgttaaagataatagc 50  Q
    |||||||||||||||||||||||||||||||| |||||| | ||||||    
T  24107089 attcattacatcactctcaagttcatcataagcgttaaaaacaatagc 24107136  T

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Target: scaffold0477 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 180
Target Start/End: Complemental strand, 3971 - 3930
Alignment:
Q  139 tccttcagtcgaaagttctgcaatcctggaatacagtctact 180  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  3971 tccttcagccgaaagttctgcaatcctggaataccgtctact 3930  T

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Target: scaffold0288 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 3138 - 3077
Alignment:
Q  1 gcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtg 62  Q
    ||||||| |||||||||||||||||||| |||||||||||| | ||| ||||| ||| ||||    
T  3138 gcattcagtacatcactctcaagttcattataagtgttaaaaacaattgcagaagctctgtg 3077  T

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