View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_19 (Length: 295)
Name: NF1970_low_19
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 159
Target Start/End: Original strand, 43979474 - 43979615
Alignment:
| Q |
18 |
cagctaagggatgaaactgaacgtgtgctttctcctactatctgaaactgaaagcctctcttttatttctcattgctactgtgatttcgattcctgcaaa |
117 |
Q |
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| T |
43979474 |
cagctaagggatgaaactgaacgtgtgctttctcctactatctgaaactgaaagcctctcttttatttctcattgctactgtgatttcgattcctgcaaa |
43979573 |
T |
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| Q |
118 |
ttcctcttgtactcatgcaagtgttggatattgttctttgaa |
159 |
Q |
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| T |
43979574 |
ttcctcttgtactcatgcaagtgttgaatattgttctttgaa |
43979615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 254
Target Start/End: Original strand, 37746019 - 37746177
Alignment:
| Q |
101 |
atttcgattcctgcaaattcctcttgtactcatgcaagt--------gttggatattgttctttgaactcaataaagcaatatgttcatcaattttattc |
192 |
Q |
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| T |
37746019 |
atttcaattcctgtaaattccatttgtactcatgcaagtctacaagagttgaatattattctttgaattcaaaaatgcagt--gctcatcaatttttttc |
37746116 |
T |
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| Q |
193 |
atacaagttgtttgatcaattgcttcttagaaattccctcatcacaaggtgataggggataa |
254 |
Q |
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| T |
37746117 |
atacaaactgtttgatcaattgcttgtta-caattcactcattacaaggtgatggaggataa |
37746177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 208
Target Start/End: Original strand, 48734406 - 48734540
Alignment:
| Q |
72 |
cctctcttttatttctcattgctactgtgatttcgattcctgcaaattcctcttgtactcatgcaagtgttggatattgttctttgaactcaataaagca |
171 |
Q |
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| T |
48734406 |
cctctctttcatttctcagtgctaccgtaatttccattcctgtaaattccccttatactcatgcaagagttgaatgttattctttgatttcaataaatca |
48734505 |
T |
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| Q |
172 |
atatgttcatcaattttattcatacaagttgtttgat |
208 |
Q |
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| T |
48734506 |
--gtgctcatcaattttattcatacaaactgtttgat |
48734540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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