View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1970_low_2 (Length: 611)

Name: NF1970_low_2
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1970_low_2
NF1970_low_2
[»] chr6 (7 HSPs)
chr6 (95-592)||(6589988-6590485)
chr6 (481-582)||(6595895-6595996)
chr6 (248-327)||(6405640-6405719)
chr6 (87-127)||(6411711-6411751)
chr6 (300-352)||(6603751-6603803)
chr6 (414-481)||(6596028-6596097)
chr6 (36-113)||(392395-392472)
[»] chr8 (2 HSPs)
chr8 (221-314)||(36768206-36768299)
chr8 (87-125)||(36768829-36768867)
[»] chr4 (1 HSPs)
chr4 (70-133)||(21835702-21835766)
[»] chr5 (3 HSPs)
chr5 (224-328)||(28524549-28524653)
chr5 (93-183)||(20480395-20480488)
chr5 (154-183)||(28524451-28524480)


Alignment Details
Target: chr6 (Bit Score: 438; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 95 - 592
Target Start/End: Complemental strand, 6590485 - 6589988
Alignment:
Q  95 tttctttaattccaaacttgcttaaatttctttaaactgtaatcttccctcaatctccggtaacctgtagcatacacaaaatgaatcaacattattttga 194  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  6590485 tttctttaattccaaacatgcttaaatttctttgaactgtaatcttcccttgatctctggtaacctgtagcatacacaaaatgaatcaacattatttcga 6590386  T
Q  195 atgtcactcaatacctaattaacaaacacaaccgcaaaaataaagacccaacagctagatatcagaacttcgatgatggaaacataatgacttaggatct 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6590385 atgtcactcaatacctaattaacaaacacaaccgcaaaaataaagacccaacagctagatatcagaacttcgatgatggaaacataatgacttaggatct 6590286  T
Q  295 tattcatatatacctagattaaatgtgttattagaaggacacaaacccatctggattcaaaaatacaattttatacatgcagcagccccataaattgaaa 394  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  6590285 tattcatatatacctagattaaatgtgtaattagaaggacacaaacccatctggtttcaaaaagtcaattttatacatgcagcagccccataaattgaaa 6590186  T
Q  395 ctacatcaagagagaatcacacagtaaacctagacagcagatcactaaaaaacatgcagcatatcagaatgccttttttgtttactatgagaatatgaca 494  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6590185 ctacatcaagagagaatcacacagtaaaccaagacagcagatcattaaaaaacatgcagcatatcaggatgccttttttgtttactatgagaatatgaca 6590086  T
Q  495 cgcctatatgaatgcttgcggtaaattcaatttgactaagtttttctttggatcatcttttcaagaagtcgttgagaatgagtatgtgatatgggtgt 592  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6590085 cgcctatatgaatgcttgcggtaaattcagtttgactaagtttttctttggatcatctttttaagaagtcgttgagaatgagtatgtgatatgggtgt 6589988  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 481 - 582
Target Start/End: Complemental strand, 6595996 - 6595895
Alignment:
Q  481 atgagaatatgacacgcctatatgaatgcttgcggtaaattcaatttgactaagtttttctttggatcatcttttcaagaagtcgttgagaatgagtatg 580  Q
    |||| ||||||||||  |||||||| ||| | ||||||||||| ||||  |||||||| |||||||||||||||| ||||| ||||| ||||||||||||    
T  6595996 atgaaaatatgacacaactatatgactgcatacggtaaattcagtttggttaagttttgctttggatcatctttttaagaattcgttcagaatgagtatg 6595897  T
Q  581 tg 582  Q
    ||    
T  6595896 tg 6595895  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 248 - 327
Target Start/End: Original strand, 6405640 - 6405719
Alignment:
Q  248 gctagatatcagaacttcgatgatggaaacataatgacttaggatcttattcatatatacctagattaaatgtgttatta 327  Q
    |||||||| || |||||||||||||||||||||||||||| ||||| ||||| |||||||||| | ||| ||||| ||||    
T  6405640 gctagataccataacttcgatgatggaaacataatgactttggatcctattcgtatatacctaaactaattgtgtgatta 6405719  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 6411711 - 6411751
Alignment:
Q  87 tctagctatttctttaattccaaacttgcttaaatttcttt 127  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  6411711 tctagctatttctttaattccaaacttgcttatatttcttt 6411751  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 352
Target Start/End: Complemental strand, 6603803 - 6603751
Alignment:
Q  300 atatatacctagattaaatgtgttattagaaggacacaaacccatctggattc 352  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| || |||||    
T  6603803 atatatacctaaattaaatgtgttgttagaaggacacaaacccacctagattc 6603751  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 481
Target Start/End: Complemental strand, 6596097 - 6596028
Alignment:
Q  414 cacagtaaacctagacagcagatcactaaaaaacatgcagcatat--cagaatgccttttttgtttacta 481  Q
    ||||| ||| || |||||||| || |||||| |||||||||||||  |||||||||||||||||||||||    
T  6596097 cacagaaaatcttgacagcagctcgctaaaagacatgcagcatatatcagaatgccttttttgtttacta 6596028  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 392395 - 392472
Alignment:
Q  36 caaaataaagcaaattcctgggccctcaatttttctttggagtctttccactctagctatttctttaattccaaactt 113  Q
    |||||||||| |||||| | ||| |||| || | |||||||  ||||||| ||||||||||||||||||| |||||||    
T  392395 caaaataaaggaaattcttaggcactcagttgtgctttggaacctttccattctagctatttctttaatttcaaactt 392472  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 221 - 314
Target Start/End: Complemental strand, 36768299 - 36768206
Alignment:
Q  221 cacaaccgcaaaaataaagacccaacagctagatatcagaacttcgatgatggaaacataatgacttaggatcttattcatatatacctagatt 314  Q
    ||||||| ||||||||||||||||||||||||||  || ||||| |||||||| ||||||||||||| ||||| |||||||| ||| |||||||    
T  36768299 cacaaccacaaaaataaagacccaacagctagatcccaaaactttgatgatggtaacataatgactttggatcctattcatacatatctagatt 36768206  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 125
Target Start/End: Complemental strand, 36768867 - 36768829
Alignment:
Q  87 tctagctatttctttaattccaaacttgcttaaatttct 125  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  36768867 tctagctatttctttaattccaaacttgccgaaatttct 36768829  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 21835766 - 21835702
Alignment:
Q  70 ctttggagtctttccact-ctagctatttctttaattccaaacttgcttaaatttctttaaactg 133  Q
    ||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||| |||||    
T  21835766 ctttggaatctttccagttctagctatttctttaattccaaacttgcttaaatttctttgaactg 21835702  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 328
Target Start/End: Original strand, 28524549 - 28524653
Alignment:
Q  224 aaccgcaaaaataaagacccaacagctagatatcagaacttcgatgatggaaacataatgacttaggatcttattcatatatacctagattaaatgtgtt 323  Q
    ||||||||| |||||||||   | |||||| | | |||||| |||||||||||||| ||||||| ||||  || ||||||||||||| || |||| | ||    
T  28524549 aaccgcaaatataaagaccgcgcggctagacaccggaacttagatgatggaaacatgatgactttggatgctaatcatatatacctaaataaaatatttt 28524648  T
Q  324 attag 328  Q
    |||||    
T  28524649 attag 28524653  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 20480488 - 20480395
Alignment:
Q  93 tatttctttaattccaaacttgcttaaatttctttaaactg-ta--atcttccctcaatctccggtaacctgtagcatacacaaaatgaatcaa 183  Q
    |||||| ||||| ||| |||||||||||||||||||||||| ||  | ||| | |  |||||  ||||||||||||||| ||||||||||||||    
T  20480488 tatttccttaatgccatacttgcttaaatttctttaaactgctagcaccttacatggatctctagtaacctgtagcatatacaaaatgaatcaa 20480395  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 183
Target Start/End: Original strand, 28524451 - 28524480
Alignment:
Q  154 gtaacctgtagcatacacaaaatgaatcaa 183  Q
    ||||||||||||||||||||||||||||||    
T  28524451 gtaacctgtagcatacacaaaatgaatcaa 28524480  T

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