View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_20 (Length: 281)
Name: NF1970_low_20
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 39839418 - 39839171
Alignment:
| Q |
19 |
agaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatatactcaacttcatttgtcttgaccctc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839418 |
agaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatatactcaacttcatttgtcttgaccctc |
39839319 |
T |
|
| Q |
119 |
cacaatccactggtttcatcatacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839318 |
cacaatccactggtttcatcatacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatga |
39839219 |
T |
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| Q |
219 |
attgtttctttgaagggtattcagggaaatcttcaggcattggaaggt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839218 |
attgtttctttgaagggtattcagggaaatcttcaggcattggaaggt |
39839171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 39733540 - 39733741
Alignment:
| Q |
19 |
agaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatatactcaacttcatttgtcttgaccctc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733540 |
agaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatatactcaacttcatttgtcttgaccctc |
39733639 |
T |
|
| Q |
119 |
cacaatccactggtttcatcatacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733640 |
cacaatccactggtttcatcatacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatga |
39733739 |
T |
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| Q |
219 |
at |
220 |
Q |
| |
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|| |
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| T |
39733740 |
at |
39733741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 164 - 266
Target Start/End: Original strand, 31290616 - 31290718
Alignment:
| Q |
164 |
ttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtttctttgaagggtattcagggaaatcttcaggcattggaa |
263 |
Q |
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|||||||| |||| ||||||||||||||| | |||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31290616 |
ttgaattgtgggtcgatttcaaatttgttcggatagttttcaaggtagtttatgaactgtttctttgaagggtattcatggaaatcttcaggcattggaa |
31290715 |
T |
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| Q |
264 |
ggt |
266 |
Q |
| |
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||| |
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| T |
31290716 |
ggt |
31290718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 31290181 - 31290084
Alignment:
| Q |
169 |
ttgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtttctttgaagggtattcagggaaatcttcaggcattggaaggt |
266 |
Q |
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||||||| ||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31290181 |
ttgcggggagatttcaaatttgttagcatagtttacaagatagtttatgaactgtttctttgaagggtattcagggaaatcttcaagcattggaaggt |
31290084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 31290504 - 31290472
Alignment:
| Q |
66 |
tagcaacaacaagccacctacaaatatactcaa |
98 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
31290504 |
tagcaacaacaagccacctacaaatattctcaa |
31290472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 243
Target Start/End: Original strand, 29857624 - 29857836
Alignment:
| Q |
43 |
aacacactcagcattttcgccggtagcaacaacaagccacctacaaatatactcaacttcattt------------gtcttgaccctccacaatccactg |
130 |
Q |
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||||||||| ||||| || || |||||||| |||||| |||||||||||||||||||||||||| |||| || |||||||| ||| | |
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| T |
29857624 |
aacacactctgcattctcaccagtagcaaccacaagcgacctacaaatatactcaacttcatttccattggaaacagtctcaactctccacaacccatta |
29857723 |
T |
|
| Q |
131 |
gtttcatcatacttagcagattgaacacactcgttgaattgcgggttgatttcaaatttgttagcatagttttcaaggtagcttatgaattgtttctttg |
230 |
Q |
| |
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|| |||||||| ||||||||||||||||||||||||||| |||||||||||||||| | || || ||| |||||| ||| ||||||| |||||||||| |
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| T |
29857724 |
gtctcatcatatttagcagattgaacacactcgttgaatcgcgggttgatttcaaagtgtttcgcgtaggattcaagatagtttatgaactgtttctttg |
29857823 |
T |
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| Q |
231 |
aagggtattcagg |
243 |
Q |
| |
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|| |||||||| |
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| T |
29857824 |
ttggatattcagg |
29857836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 17408021 - 17407974
Alignment:
| Q |
56 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
103 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17408021 |
ttttcaccggtagcaaccacaagccacctacaaatatactcaacttca |
17407974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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