View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_24 (Length: 258)
Name: NF1970_low_24
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_24 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 38097512 - 38097274
Alignment:
| Q |
17 |
aaattatttttcttcatactccattgatgaatcaacttataaaagaaatttgataggcttttattttattcaaatcaagttaacttgtattattatttca |
116 |
Q |
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| T |
38097512 |
aaattatttttcttcatactccattgatgaatcaacttataaaagaaatttgataggcttttattttattcaaatcaagttaacttgtattatt---tca |
38097416 |
T |
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| Q |
117 |
aacgaattcatggcacaatcatatatagaagaatgaaaattacccgaggagcataagagaaagaagtttgtgccaaagcaggagtactatcattagtttg |
216 |
Q |
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| T |
38097415 |
aacgaattcatggcacaatcatatatagaagaatgaaaattatccgaggagcataagagaaagaagtttgtgccaaagcaggagtactatcattagtttg |
38097316 |
T |
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| Q |
217 |
tcgcctagtgaatacaacctctaagttgttgcaattagataa |
258 |
Q |
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| T |
38097315 |
tcgcctagtgaatacaacctctaagttgttgcaattagataa |
38097274 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 6783773 - 6783852
Alignment:
| Q |
168 |
cataagagaaagaagtttgtgccaaagcaggagtactatcattagtttgtcgcctagtgaatacaacctctaagttgttg |
247 |
Q |
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| T |
6783773 |
cataagagatagaagtttgtgccaaaacatgagctccatcattagtttttcgcctggtgaaaacaacttgaaagttgttg |
6783852 |
T |
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