View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_26 (Length: 257)
Name: NF1970_low_26
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 21562827 - 21563067
Alignment:
| Q |
1 |
acgaagaacataaggatttttccatgatagagacaaacattctctgaaagcagatacatcagcttcaggtactcctccttccattttcagcaattaacaa |
100 |
Q |
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| T |
21562827 |
acgaagaacataaggatttttccatgatagagacaaacattctctgaaagcagatacatcagcttcaggtactcctccttccattttcagcaattaacaa |
21562926 |
T |
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| Q |
101 |
aagcaagatataagaaattgaaggctttgttannnnnnngttttatttgcaaactataaagtccataaaatgtagaagagactagaaagtgagctagtca |
200 |
Q |
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| T |
21562927 |
aagcaagatataagaaattgaaggctttgttatttttttgttttatttgcaaactataaagtccataaaatgtagaagaggctagaaagtgagctagtca |
21563026 |
T |
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| Q |
201 |
aaaggataataaaagaagtgatactatagtagtatatttat |
241 |
Q |
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|||||||||||||| | |||||||||||||| |||||||| |
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| T |
21563027 |
aaaggataataaaaagaatgatactatagtagcatatttat |
21563067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 21496777 - 21496860
Alignment:
| Q |
1 |
acgaagaacataaggatttttccatgatagagacaaacattctctgaaagcagatacatcagcttcaggtactcctccttccat |
84 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| | ||| ||||| ||||| ||||||||||| |
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| T |
21496777 |
acgaagaacataaggatttttccatgatagagataaacattctctgaaagcagacatatctgcttctggtacacctccttccat |
21496860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 51032244 - 51032205
Alignment:
| Q |
1 |
acgaagaacataaggatttttccatgatagagacaaacat |
40 |
Q |
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| T |
51032244 |
acgaagaacataaggatttttccatgatagagataaacat |
51032205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 33112568 - 33112482
Alignment:
| Q |
1 |
acgaagaacataaggatttttccatgatagagacaaacattctctgaaagcagatacatcagcttcaggtactcctccttccatttt |
87 |
Q |
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|||||| |||||||||||||||||||| || || | ||||||||| ||||| |||| ||||| | | ||||| | ||||||||||| |
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| T |
33112568 |
acgaaggacataaggatttttccatgaaagggaaagacattctctaaaagctgatatatcaggcttatgtacttcaccttccatttt |
33112482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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