View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_28 (Length: 256)
Name: NF1970_low_28
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 39244051 - 39243803
Alignment:
| Q |
1 |
gctaacgaacattccaatgcacaaaacacaattggtggtagtgacctctcgtatcacctctagaaataataaattaactttgtatgtacttcnnnnnnnn |
100 |
Q |
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| T |
39244051 |
gctaacgaacattccaatgcacaaaacacaattggtggtagtgacctctcgtatcacctctagaaataataaattaactttgtatgtactcctttttttt |
39243952 |
T |
|
| Q |
101 |
----gttaacttttgatgttggatccctacacagtttaaattacattacttttcccttgtcaactatttttaattaatcacgttttgagttcactcaatg |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || ||||||| |
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| T |
39243951 |
ttttgttaacttttgatgttggatccctacacagtttaaattacattactttttccttgtcaactatttttaattaatcacg-tttgaggtcgctcaatg |
39243853 |
T |
|
| Q |
197 |
tttattttttcaacgacaggtcactcatggttgatcttgtggtatctgtg |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39243852 |
tttattttttcaacgacaggtcactcatggttgatcttgtggtatctgtg |
39243803 |
T |
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