View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_31 (Length: 249)
Name: NF1970_low_31
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 3432073 - 3431837
Alignment:
| Q |
1 |
tttatgtgtgtgtatcttgtatttatattgattatttcatctgtgtaaatatggctttacatttgtataatttgaaaacatattcatatatatgtagcgt |
100 |
Q |
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| T |
3432073 |
tttatgtgtgtgtatcttgtatttatattgattatttcatctgtgtaaatatggctttacatttgtataatttgaaaacatattcatat----gtagcgt |
3431978 |
T |
|
| Q |
101 |
tgaatatattaaatcataccatgaattaaaatagtgtatcgactatatgtactccttcgtacctaatactttgatggttgtgtactagagctcgtatcaa |
200 |
Q |
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| T |
3431977 |
tgaatatattaaatcataccatgaattaaaatagtgtatcgactatatgtactccttcgtacctaatactttgagggttgtgtactagaactcgtatcaa |
3431878 |
T |
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| Q |
201 |
gtagcgaagcgaattacgaaccaattactgactatattctt |
241 |
Q |
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| T |
3431877 |
gtagcgaagcgaattacgaaccaattattgactatgttctt |
3431837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 11913426 - 11913643
Alignment:
| Q |
1 |
tttatgtgtgtgtatcttgtatttatattgattatttcatctgtgtaaatatggctttacatttgtataatttgaaaacatattcatatatatgtagcgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| | || ||| |
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| T |
11913426 |
tttatgtgtgtgtatcttgtatttatattgattatttca---gtgtaaatatggctttacatttgtataatttaaaaacatattcata---aggtgccgt |
11913519 |
T |
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| Q |
101 |
tgaatatattaaatcataccatgaattaaaatagtgtatcgactat----atgtactccttcgtacc---taatactttgatggttgtgtactagagctc |
193 |
Q |
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| T |
11913520 |
ttaatatattaaatcataccataatttgaaatagtgcatcgactatatgcatgtactccttcatacctaataatactttgagggttgtgtaatagagctc |
11913619 |
T |
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| Q |
194 |
gtatcaagtagcgaagcgaattac |
217 |
Q |
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| T |
11913620 |
gtatcaaggaacgaagcgaattac |
11913643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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