View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_32 (Length: 244)
Name: NF1970_low_32
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 15379704 - 15379474
Alignment:
| Q |
1 |
ttgaagaaaagttaaagtacaatacaacacaaattcactattactagtacttcacaacattttgttgacaaaagttaattcttcccaaccatctcaacta |
100 |
Q |
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| T |
15379704 |
ttgaagaaaagttaaagtacaatacaacacaaattcactattactagtacttcacaacattttgttgacacaaattaattcttcccaaccatctcaacta |
15379605 |
T |
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| Q |
101 |
ctcgtgattgacatttcatatctttatatagctacaggaatcaaaagtatgcacttgggtctaccttggattttagataagataatttgtgtagctcgtg |
200 |
Q |
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| T |
15379604 |
ctcgtgattgacatttcatatctttatatcgctacaggaatcaaaagtatgcatttgggtctaccttggattttagataagataatttgtgtagctcgtg |
15379505 |
T |
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| Q |
201 |
aaatgagaaacccagtaaaagttgaagttga |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
15379504 |
aaatgagaaacccagtaaaagttgaagttga |
15379474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 7706694 - 7706745
Alignment:
| Q |
109 |
tgacatttcatatctttatatagctacaggaatcaaaagtatgcacttgggt |
160 |
Q |
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||||||||||||| ||||| ||||||||||||| ||||||||| | |||||| |
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| T |
7706694 |
tgacatttcatatatttatgtagctacaggaattaaaagtatgtatttgggt |
7706745 |
T |
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