View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_33 (Length: 242)
Name: NF1970_low_33
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_33 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 53676208 - 53675958
Alignment:
| Q |
1 |
tttccactttatcatccatcagaaaaagagaaaacagttagtgtcctctcaaagtttcattgatgataaagtgatgactgtaactannnnnnncaagaat |
100 |
Q |
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| T |
53676208 |
tttccactttatcatccatcagaaaaagagaaaacagttagtgtcctctcaaagtttcattgatgataaagtgatgaatgtaactatttttttcaagaat |
53676109 |
T |
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| Q |
101 |
tgcaaatagtccaacaagctttcctaccaactggaagt---------aaaactaaaaataataaaggcacaaaattttgtaaaaaggaggttcatttttg |
191 |
Q |
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| T |
53676108 |
tgcaaatagtccaacaagctttcctaccaactggaagtaaaaaaaaaaaaactaaaaataataaaggcacaaaattttgtaaaaaggaggttcatttttg |
53676009 |
T |
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| Q |
192 |
gcttatataacaagacaagataaaatgatatacatgcccaccacctatgct |
242 |
Q |
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| T |
53676008 |
gcttatataacaagacaagataaaatgatatacatgcccaccacctttgct |
53675958 |
T |
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