View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_34 (Length: 236)
Name: NF1970_low_34
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 50029927 - 50029708
Alignment:
| Q |
1 |
tttgtgttggcacatactagtggcaactttaagcagtttccgtttcatcgataattttaaaaaagtcaatttataccctattaggatcggaaaaactcgt |
100 |
Q |
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| T |
50029927 |
tttgtgttggcacatactagtggcaactttaagcagtttccgtttcatcgataattttaaaaaagtcaatttataccctattagggtcggaaaaactcgt |
50029828 |
T |
|
| Q |
101 |
gaaacatataatttacgccacactgcatcagcttctttacactatataagaatctgaaactcttcattctttatgggctgtcgatagttgaagctggggg |
200 |
Q |
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| T |
50029827 |
gaaacatataatttacgccacactgcatcagcttctttacactatataagaatctggaactcttcattctttatgggccgtcgaaagttgaagctggggg |
50029728 |
T |
|
| Q |
201 |
aggagaatccatgtgcccca |
220 |
Q |
| |
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|||||||||||||||||||| |
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| T |
50029727 |
aggagaatccatgtgcccca |
50029708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 180
Target Start/End: Original strand, 7698463 - 7698565
Alignment:
| Q |
76 |
ccctattaggatcggaaaaactcgtgaaacatataatttacgccacactgcatcagcttctttacactatataagaatctgaaactcttcattctttatg |
175 |
Q |
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||||||||| || |||||| |||| ||||||| ||||| ||||| || || ||||||||||||| |||||||||||||| ||||||||||| ||| || |
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| T |
7698463 |
ccctattagagtctgaaaaattcgtaaaacata--atttaagccacgctacaccagcttctttacaatatataagaatctggaactcttcattttttctg |
7698560 |
T |
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| Q |
176 |
ggctg |
180 |
Q |
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||||| |
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| T |
7698561 |
ggctg |
7698565 |
T |
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