View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_35 (Length: 229)
Name: NF1970_low_35
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 212
Target Start/End: Original strand, 8066288 - 8066493
Alignment:
| Q |
7 |
gtcgaagaatatacattttaacgtaggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttgagccctca |
106 |
Q |
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| T |
8066288 |
gtcgaacactatacattttaacgtaggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttatgccctca |
8066387 |
T |
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| Q |
107 |
aaaactgatttgcaatcactcattgcaaacctcatcatattagagtcactctccatagcatcattgaataactccgcgtaagccgaattttgttgcatga |
206 |
Q |
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| T |
8066388 |
aaaactgatttgcaatcactcattgcaaacctcatcatattagagtcactctccatagcatcattgaataactccgcgtaagccgaattttgttgcatga |
8066487 |
T |
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| Q |
207 |
aatccc |
212 |
Q |
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|||||| |
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| T |
8066488 |
aatccc |
8066493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 8074723 - 8074895
Alignment:
| Q |
7 |
gtcgaagaatatacattttaacgtaggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaaagaagttgagccctca |
106 |
Q |
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|||||| | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
8074723 |
gtcgaacactatacattttaacgtaggaaacgcctcacaaataattttaacagtgtttccggttccacctccaacatcaaccaacgaagttaagccctca |
8074822 |
T |
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| Q |
107 |
aaaactgatttgcaatcactcattgcaaacctcatcatattagagtcactctccatagcatcattgaataact |
179 |
Q |
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| T |
8074823 |
aaaactgatttgcaatcactcattgcaaacctcaccatattagaatcactttccatagcatcattgaataact |
8074895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 34951317 - 34951375
Alignment:
| Q |
32 |
ggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaa |
90 |
Q |
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| T |
34951317 |
ggaaacgcctcacaaataatcttagctgtgtttccagttccaccaccaacatcaaccaa |
34951375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 34946846 - 34946904
Alignment:
| Q |
32 |
ggaaacgcctcagaaataattttaaccgtgtttccggttccacctccaacatcaaccaa |
90 |
Q |
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|||||||||||| | ||||| ||| | |||||||| |||||||| |||||||||||||| |
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| T |
34946846 |
ggaaacgcctcacatataatcttagctgtgtttccagttccaccaccaacatcaaccaa |
34946904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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