View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1970_low_37 (Length: 227)

Name: NF1970_low_37
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1970_low_37
NF1970_low_37
[»] chr1 (20 HSPs)
chr1 (98-227)||(50030959-50031088)
chr1 (128-227)||(47655756-47655855)
chr1 (128-227)||(27416695-27416793)
chr1 (128-227)||(13509809-13509907)
chr1 (128-227)||(24075653-24075751)
chr1 (128-227)||(41512275-41512373)
chr1 (128-227)||(46033546-46033644)
chr1 (128-227)||(6706263-6706359)
chr1 (128-227)||(44740276-44740374)
chr1 (144-210)||(7385363-7385429)
chr1 (128-227)||(1762349-1762447)
chr1 (128-227)||(4485053-4485148)
chr1 (130-227)||(27067266-27067362)
chr1 (134-227)||(42137576-42137668)
chr1 (133-227)||(49430764-49430856)
chr1 (128-227)||(45179463-45179560)
chr1 (130-224)||(31100338-31100431)
chr1 (156-227)||(11050997-11051064)
chr1 (192-227)||(3850797-3850832)
chr1 (130-227)||(11829208-11829301)
[»] chr5 (13 HSPs)
chr5 (127-227)||(31905561-31905661)
chr5 (127-227)||(41742089-41742189)
chr5 (128-227)||(10900263-10900361)
chr5 (130-227)||(40979550-40979646)
chr5 (130-227)||(8958374-8958470)
chr5 (128-220)||(53536-53627)
chr5 (128-227)||(41040005-41040103)
chr5 (157-227)||(19356632-19356702)
chr5 (128-227)||(11018298-11018396)
chr5 (128-227)||(25256683-25256782)
chr5 (128-227)||(25320474-25320573)
chr5 (128-227)||(33387568-33387663)
chr5 (183-227)||(19375330-19375373)
[»] chr7 (16 HSPs)
chr7 (128-227)||(25472633-25472732)
chr7 (128-227)||(30139697-30139796)
chr7 (128-227)||(43664684-43664781)
chr7 (128-227)||(14999999-15000097)
chr7 (128-211)||(26826519-26826601)
chr7 (128-227)||(26827636-26827730)
chr7 (142-227)||(25970564-25970648)
chr7 (130-227)||(30825321-30825416)
chr7 (128-227)||(47158091-47158190)
chr7 (128-227)||(2000038-2000136)
chr7 (176-226)||(37371211-37371261)
chr7 (130-227)||(32450882-32450977)
chr7 (128-227)||(45202602-45202699)
chr7 (130-227)||(25191732-25191829)
chr7 (128-227)||(298528-298628)
chr7 (130-227)||(47085558-47085656)
[»] scaffold0068 (1 HSPs)
scaffold0068 (128-227)||(37826-37925)
[»] chr2 (10 HSPs)
chr2 (128-227)||(35458053-35458152)
chr2 (128-227)||(43342145-43342244)
chr2 (130-227)||(37640632-37640728)
chr2 (128-227)||(44002778-44002876)
chr2 (158-227)||(17480945-17481014)
chr2 (130-227)||(32497081-32497176)
chr2 (128-227)||(7473649-7473747)
chr2 (128-227)||(37996849-37996946)
chr2 (128-224)||(43695097-43695192)
chr2 (168-227)||(19860384-19860439)
[»] chr8 (12 HSPs)
chr8 (127-227)||(45276270-45276370)
chr8 (128-227)||(22936438-22936537)
chr8 (128-227)||(2025644-2025742)
chr8 (128-227)||(8416793-8416892)
chr8 (128-227)||(35802213-35802311)
chr8 (128-227)||(13015810-13015908)
chr8 (128-227)||(35164250-35164348)
chr8 (128-227)||(33165923-33166021)
chr8 (128-227)||(36821495-36821594)
chr8 (128-227)||(3590205-3590299)
chr8 (155-207)||(7637381-7637432)
chr8 (190-227)||(924232-924269)
[»] chr3 (18 HSPs)
chr3 (128-227)||(30810839-30810937)
chr3 (128-227)||(39251607-39251706)
chr3 (128-227)||(45150729-45150827)
chr3 (128-227)||(48254372-48254471)
chr3 (128-227)||(11263822-11263920)
chr3 (128-227)||(28182501-28182599)
chr3 (128-227)||(50392689-50392787)
chr3 (128-227)||(51407595-51407693)
chr3 (128-227)||(51229858-51229956)
chr3 (141-227)||(42074523-42074608)
chr3 (128-227)||(42274648-42274746)
chr3 (128-227)||(48181200-48181298)
chr3 (128-227)||(53687246-53687344)
chr3 (146-227)||(33025685-33025765)
chr3 (130-227)||(45488979-45489078)
chr3 (128-227)||(44328783-44328882)
chr3 (128-227)||(28883821-28883919)
chr3 (128-227)||(44610695-44610792)
[»] chr4 (16 HSPs)
chr4 (128-220)||(28963737-28963829)
chr4 (128-227)||(30418262-30418364)
chr4 (128-227)||(22606229-22606327)
chr4 (128-227)||(50523740-50523838)
chr4 (128-227)||(53663504-53663602)
chr4 (130-227)||(39732941-39733037)
chr4 (128-227)||(38767922-38768020)
chr4 (128-219)||(8510297-8510387)
chr4 (128-227)||(45105937-45106035)
chr4 (128-227)||(48407083-48407181)
chr4 (129-227)||(49723914-49724008)
chr4 (128-227)||(29385913-29386003)
chr4 (128-227)||(26457242-26457340)
chr4 (128-225)||(53403985-53404076)
chr4 (128-227)||(51677233-51677327)
chr4 (128-227)||(16202966-16203061)
[»] scaffold0808 (1 HSPs)
scaffold0808 (128-227)||(4221-4317)
[»] scaffold0097 (1 HSPs)
scaffold0097 (132-227)||(32935-33029)
[»] scaffold0006 (1 HSPs)
scaffold0006 (132-227)||(91667-91761)
[»] scaffold0069 (1 HSPs)
scaffold0069 (128-221)||(16948-17040)
[»] chr6 (5 HSPs)
chr6 (154-224)||(365731-365801)
chr6 (130-224)||(20838366-20838459)
chr6 (128-227)||(27825130-27825229)
chr6 (130-211)||(10683304-10683382)
chr6 (128-227)||(30134278-30134372)
[»] scaffold0184 (1 HSPs)
scaffold0184 (166-227)||(9601-9661)


Alignment Details
Target: chr1 (Bit Score: 106; Significance: 3e-53; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 50031088 - 50030959
Alignment:
Q  98 taagtcatgaccataaacannnnnnnngacgctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaagg 197  Q
    |||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50031088 taagtcatgaccataaacatttttttggacgctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaagg 50030989  T
Q  198 agaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||||||||||||||||    
T  50030988 agaattgataaagggcaataaaggaaaata 50030959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 47655756 - 47655855
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47655756 gctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaagagaattgataaagggcaataaaggaaaata 47655855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 27416793 - 27416695
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||| |||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27416793 gctaatttggttcgttaaattttctgattaaatttggttcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 27416695  T

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Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 13509809 - 13509907
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13509809 gctaatttggttcgttcagttttgtaattaaatttggttcatcaagttaaattacaaagcaaaaagaagga-aattgataaagggcaataaaggaaaata 13509907  T

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Target: chr1; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 24075751 - 24075653
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||  |||||||||||||||||||||| |||||||    
T  24075751 gctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaa-tacaaagcaaaaagaaatagaattgataaagggcaataaatgaaaata 24075653  T

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Target: chr1; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 41512373 - 41512275
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||    
T  41512373 gctaatttggttcgttaagttttctgattaaatttggttcatcaaactaaat-acaaaacaaaaagaaggagaattgataaaggacaataaaggaaaata 41512275  T

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Target: chr1; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 46033546 - 46033644
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||| ||| |||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46033546 gctaatttggtttgttgagttttctgattaaatttggttcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaagagcaataaaggaaaata 46033644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 6706359 - 6706263
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||  ||||   ||||||||||||||||||||||||||||||||||    
T  6706359 gctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattataattcaaa---aaggagaattgataaagggcaataaaggaaaata 6706263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 44740374 - 44740276
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||||||||||| |||||||||| |||||||| |||| |||||||||||| |||||||||||||||||||||||| | |||||||||    
T  44740374 gctaatttggttcgttaagttttctgattaaatttggttcatcaagttaa-ttacaaagcaaacagaaggagaattgataaagggcaaaataggaaaata 44740276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 7385429 - 7385363
Alignment:
Q  144 aagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7385429 aagttttctaattaaatttgattcatcaaattaaattacaaagtaaaaagaaggagaattgataaag 7385363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 1762447 - 1762349
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||| |||| | ||  |||||| ||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||    
T  1762447 gctaatttggttcgttaaattttttgatacaatttggttcatcaaattaaat-acaaaccaaaaagaaggagaattgataaaggacaataaaggaaaata 1762349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 4485053 - 4485148
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||| | |||||||||||||||||||||||||| ||||||||||| ||||||||||||||   ||||| ||||||||||||||||||||| ||||||    
T  4485053 gctaattagtttcgttaagttttctaattaaatttggttcatcaaatt-aattacaaagcaaa---aaggataattgataaagggcaataaagaaaaata 4485148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 27067362 - 27067266
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||| |||||||| |||| | |||||||||| ||||||||||||||| ||||| |||| |||||||||||||||||||| |||||||||||||||    
T  27067362 taatttgattcgttaattttttttattaaatttggttcatcaaattaaat-acaaatcaaagagaaggagaattgataaaggacaataaaggaaaata 27067266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 134 - 227
Target Start/End: Original strand, 42137576 - 42137668
Alignment:
Q  134 ttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||||| |||||||||| || |||| ||||||| ||||||||||||||||||||||||||| |  |||||||| |||||||    
T  42137576 ttggttcgttaagttttctgattaaatttggtttatcagattaaat-acaaagcaaaaagaaggagaattgatacaaagcaataaatgaaaata 42137668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 49430856 - 49430764
Alignment:
Q  133 tttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||| | |||||||||| ||||| ||||| |||||||||||||||||||| |||| || |||||||||||||| |||||||    
T  49430856 tttggttcgttaagttttttgattaaatttggttcattaaatt-aattacaaagcaaaaagaagaagaaatg-taaagggcaataaaagaaaata 49430764  T

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Target: chr1; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 45179560 - 45179463
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||  | |||| | ||||||||||||||||||||||||| |||||| ||||||||| || ||||||| |||| ||| |||||||||||    
T  45179560 gctaatttggttcgtagatttttttgattaaatttgattcatcaaattaaa-tacaaatcaaaaagaa-gataattgatgaaggacaacaaaggaaaata 45179463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 31100338 - 31100431
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaa 224  Q
    ||||||| |||||||| |||| | ||||||| || | ||| ||||||||| ||||| ||||||||||||||||||||||||| | ||||||||||    
T  31100338 taatttgattcgttaaattttttgattaaatgtggtacattaaattaaat-acaaaccaaaaagaaggagaattgataaaggaccataaaggaaa 31100431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 11050997 - 11051064
Alignment:
Q  156 taaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||| ||||||||||||| |||||||||||| ||   |||||||||||||||| ||||||||||||||    
T  11050997 taaatttggttcatcaaattaa-ttacaaagcaaagag---gagaattgataaagggtaataaaggaaaata 11051064  T

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Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 3850797 - 3850832
Alignment:
Q  192 agaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||||||||||||||||||||||    
T  3850797 agaaggagaattgataaagggcaataaaggaaaata 3850832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 11829301 - 11829208
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||| |||| | |||||||||| ||| |||||||||| |||||   ||||| ||  | |||||||||||| |||||||||||||||    
T  11829301 taatttggttcgttaaattttttgattaaatttggttcctcaaattaaa-tacaa---aaaaaaaataaaaattgataaaggacaataaaggaaaata 11829208  T

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Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 127 - 227
Target Start/End: Complemental strand, 31905661 - 31905561
Alignment:
Q  127 cgctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaat 226  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31905661 cgctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaat 31905562  T
Q  227 a 227  Q
    |    
T  31905561 a 31905561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 41742089 - 41742189
Alignment:
Q  127 cgctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaat 226  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41742089 cgctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaagaaaaat 41742188  T
Q  227 a 227  Q
    |    
T  41742189 a 41742189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 10900361 - 10900263
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  10900361 gctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaat-acaaagcaaaaagaaagagaattgataaagggcaataaaggaaaata 10900263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 40979646 - 40979550
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||| |||| ||||||| |||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  40979646 taatttggtttgttatgttttctgattaaatttggttcatcaaattaaat-acaaggcaaaaagaaggagaattgataaagggcaataaaggagaata 40979550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 8958374 - 8958470
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||| ||||||||| || |||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| ||||||    
T  8958374 taatttggttggttaagtttcctgattaaatttggttcatcaaattaa-ttacaaagcaaaaagaatgagaattgataaagggtaataaagaaaaata 8958470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 53536 - 53627
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaag 220  Q
    |||||||||||||||||||||||||||||||||| | ||||||||| | ||||| |||||||||| || ||||||||||||||||||||||||    
T  53536 gctaatttggttcgttaagttttctaattaaattcggttcatcaaa-tcaattaaaaagcaaaaaaaatgagaattgataaagggcaataaag 53627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 41040005 - 41040103
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||| || | |||||||||| |||||||||  ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  41040005 gctaatttgatttgctaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaagaaagagaattgataaagggcaataaagaaaaata 41040103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 19356702 - 19356632
Alignment:
Q  157 aaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  19356702 aaatttgattcatcaaattaaattacaaaggaaaaagaaggagaattgataaagggcaataatgaaaaata 19356632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 11018298 - 11018396
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||| |||||||| | |||||||||| ||||||||||| ||||| ||||||||| ||||| |||||| |||||| |||||||||||||||    
T  11018298 gctaatttggttcgctaagttttttgattaaatttggttcatcaaatt-aattagaaagcaaaaggaaggggaattgctaaaggacaataaaggaaaata 11018396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 25256683 - 25256782
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggc-aataaaggaaaat 226  Q
    |||||||||||||||||  |||| | |||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||| | || ||||||||||    
T  25256683 gctaatttggttcgttatattttttgattaaatttggttcatcaaattaaa-tacaaaccaaaaaaaaggagaattgataaaggacaaagaaaggaaaat 25256781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 25320474 - 25320573
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggc-aataaaggaaaat 226  Q
    |||||||||||||||||  |||| | |||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||| | || ||||||||||    
T  25320474 gctaatttggttcgttatattttttgattaaatttggttcatcaaattaaa-tacaaaccaaaaaaaaggagaattgataaaggacaaagaaaggaaaat 25320572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 33387568 - 33387663
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||| |||| |||| |||| | |||||||||| |||||||||||||| |||||| ||||||||   ||||||||| |||| | |||||||||||||    
T  33387568 gctaatttagttcattaatttttttgattaaatttggttcatcaaattaaa-tacaaaccaaaaaga---agaattgatgaaggacgataaaggaaaata 33387663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 183 - 227
Target Start/End: Original strand, 19375330 - 19375373
Alignment:
Q  183 aaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  19375330 aaagcaaaaagaaggagaattgataaagggc-ataaaggaaaata 19375373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 25472633 - 25472732
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25472633 gctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 25472732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 30139697 - 30139796
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30139697 gctaatttggttcgttaagttttctaattaaatttggtttatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 30139796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 43664684 - 43664781
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  43664684 gctaatttggttcgttaaattttctgattaaatttggttcatcaaatt-aattacaaagcaaaaagaaggagaatt-ataaaaggcaataaaggaaaata 43664781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 15000097 - 14999999
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||| ||||| ||||||||||| |||||||||| ||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||||||||||    
T  15000097 gctaattaggttctttaagttttctgattaaatttggttcatcaaattaa-ttacaaagaaaaaagaaggaggattgataaagggtaataaaggaaaata 14999999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 26826601 - 26826519
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagg 211  Q
    ||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||    
T  26826601 gctaatttggttcgttaagttttctgattaaatttggttcatcacatt-aattacaaagcaaaaagaaggagaattgataaagg 26826519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 26827636 - 26827730
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||||||||    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  26827636 gctaatttggttcgttaagttt----attaaatttggttcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaaggacaataaagaaaaata 26827730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 25970648 - 25970564
Alignment:
Q  142 ttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||    
T  25970648 ttaagttttctcattaaatttggttcatcaaattaa-taacaaagcaaaaagaaggagaattgataaagagcaataaaggaaaata 25970564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 30825416 - 30825321
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||| |||||||||||| |||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  30825416 taatttggttggttaagttttctgattaaatttggtt-atcaaattaa-ttacaaaacaaaaagaaggagaattgataaagggcaataaagaaaaata 30825321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 47158091 - 47158190
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagc--aaaaagaaggagaattgataaagggcaataaaggaaaa 225  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||  || ||||||||  ||||| || |||||||||||||||||||||||| ||||    
T  47158091 gctaatttggttcgttaagttttctaattaaatatggttcatcaaat--aaatacaaagcaaaaaaaaaaagagaattgataaagggcaataaagaaaaa 47158188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 2000038 - 2000136
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||| |||| | |||||||||| ||| |||||||||| |||||| |||||||||||| | |||| |||||  ||||||||||||||    
T  2000038 gctaatttggttcgttaaattttttgattaaatttgcttcgtcaaattaaa-tacaaaccaaaaagaaggaaatttgacaaaggataataaaggaaaata 2000136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 37371261 - 37371211
Alignment:
Q  176 aaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaat 226  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37371261 aaattgcaaagcaaaaagaaggagaattgataaagggcaataaaggaaaat 37371211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 32450977 - 32450882
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||| |||| || ||||||||| ||||||||||||||| |||||  ||||||||||| |||||||||||| || ||||| ||||||    
T  32450977 taatttggttcgttaaatttttta-ttaaatttggttcatcaaattaaat-acaaactaaaaagaaggataattgataaaggacagtaaagaaaaata 32450882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 45202699 - 45202602
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||| ||||||||||| ||| |||| | ||||| ||||||| || |||||||||||||| ||||||||||||||  |||||||| ||||||    
T  45202699 gctaatttggttctttaagttttctgatttaattgg-ttcattaaattaattt-caaagcaaaaagaatgagaattgataaagaacaataaagaaaaata 45202602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 25191732 - 25191829
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaa-agaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||| | || | || || |||| |||||| |||||||| ||||| ||||| |||||||||||||||||||| ||||||| |||||||    
T  25191732 taatttggttcgttaaatcttttgatcaactttggttcatcgaattaaat-acaaaccaaaaaagaaggagaattgataaaggacaataaaagaaaata 25191829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 298528 - 298628
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaat--tacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaa 225  Q
    |||||||||| | ||||| |||| | |||||||||| |||||||||||||||  | ||||  ||||| |||||||||||||||||  ||||||| |||||    
T  298528 gctaatttggattgttaaattttttgattaaatttggttcatcaaattaaatacttcaaa-aaaaaaaaaggagaattgataaagaacaataaatgaaaa 298626  T
Q  226 ta 227  Q
    ||    
T  298627 ta 298628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 47085558 - 47085656
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaag--gagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||  ||| |||| | |||||||||| ||||||||||||||| |||||  ||||| ||   ||||||||||||||| |||||||| ||||||    
T  47085558 taatttggttccataaattttttgattaaatttggttcatcaaattaaat-acaaacaaaaaaaaaatagagaattgataaaggacaataaagaaaaata 47085656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 37925 - 37826
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37925 gctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaaacaaaaagaaggagaattgataaagggcaataaaggaaaata 37826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 35458053 - 35458152
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35458053 gctaatttggttcgttaagttttctaattaaatatgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaagaaaaata 35458152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 43342145 - 43342244
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43342145 gctaatttggtttgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 43342244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 37640632 - 37640728
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37640632 taatttggttcgttaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaagaaggagaatttataaagggcaataaaggaaaata 37640728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 44002876 - 44002778
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||| |||| ||||||| |||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| |||||| ||||||    
T  44002876 gctaatttggtttgttatgttttctgattaaatttggttcatcaaattaaat-acaaagcaaaaagaaggataattgataaagggcgataaagaaaaata 44002778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 17481014 - 17480945
Alignment:
Q  158 aatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17481014 aatttggttcatcaaattaaattacaaagcaaaatgaaggagaattgataaagggcaataaaggaaaata 17480945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 32497081 - 32497176
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| | | || ||||||||||||| |||||||||||||||||    
T  32497081 taatttggttcgttaagttttctgattaaatttgattcatcaaatt-aattacaaagcagagataatgagaattgataaa-ggcaataaaggaaaata 32497176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 7473747 - 7473649
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||  |||||||||| |||||||||  ||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |||||||    
T  7473747 gctaatttggttcactaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaagaaagagaattgataaaggacaataaaagaaaata 7473649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 37996946 - 37996849
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||| ||||||||||||||  |||||||||| ||||||||| ||||||||||||||||||  | ||||||||||| ||||||||||| |||||||    
T  37996946 gctaatttgattcgttaagttttccgattaaatttggttcatcaaa-taaattacaaagcaaaaa-tatgagaattgatacagggcaataaatgaaaata 37996849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 43695192 - 43695097
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaa 224  Q
    |||||||||||||||||  |||| | ||||||  || | ||| ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||    
T  43695192 gctaatttggttcgttatatttttttattaaacgtggtacattaaattaaat-acaaaccaaaaagaaggagaattgataaaggacaataaaggaaa 43695097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 19860439 - 19860384
Alignment:
Q  168 atcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||| ||||||||||| |   ||||||||||||||| |||||||||||||||    
T  19860439 atcaaattaaat-acaaagcaaaacg---gagaattgataaaggacaataaaggaaaata 19860384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 127 - 227
Target Start/End: Original strand, 45276270 - 45276370
Alignment:
Q  127 cgctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaat 226  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  45276270 cgctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagtaggagaattgataaagggcaacaaaggaaaat 45276369  T
Q  227 a 227  Q
    |    
T  45276370 a 45276370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 22936438 - 22936537
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  22936438 gctaatttggttcgttaacttttctaattaaatttggttcatcaaattaaattacaaaacaaaaagaaggagaattgataaaggccaataaaggaaaata 22936537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 2025742 - 2025644
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||| |||||||||||||| | |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  2025742 gctaatttagttcgttaagttttatgattaaatttggttcatcaaattaaat-acaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 2025644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 8416892 - 8416793
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8416892 gctaatttggttcgtgaagttttctaattaattttggttcatcatatttaattacaaagcaaaaagaaggagtattgataaagggcaataaaggaaaata 8416793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 35802213 - 35802311
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||| |||||||||||| ||||||||   ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35802213 gctaatttggtttgttaagttttctgattaaattgtgttcatcaaattaa-ttataaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 35802311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 13015908 - 13015810
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||| |||||||| |||| | |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |||||||||||||||    
T  13015908 gctaatttgattcgttaaattttttgattaaatttgattcatcaaattaaat-acaaaccaaaaagaaagagaattgataaaggacaataaaggaaaata 13015810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 35164250 - 35164348
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||| ||| ||||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  35164250 gctaatttggttggttaagttttctgattaaatttggttcatcaaactaa-ttacaaaacaaaaagaaggagaattaataaagggcaataaaagaaaata 35164348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 33166021 - 33165923
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||| |||| | |||||||||| ||| ||||||||||| ||||| || ||| |||||||||||||||||| |||||||||||||||    
T  33166021 gctaatttggttcgttaaattttttgattaaatttgtttcctcaaattaaat-acaaaccataaaaaaggagaattgataaaggacaataaaggaaaata 33165923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 36821495 - 36821594
Alignment:
Q  128 gctaatttggttcgttaagttttcta-attaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaat 226  Q
    |||||||||||||| |||||||| |  |||||||||| ||||||||||||| ||| ||||||||||||| |||||||| ||||||| |||||||||||||    
T  36821495 gctaatttggttcgctaagtttttttgattaaatttggttcatcaaattaa-ttagaaagcaaaaagaatgagaattgttaaagggtaataaaggaaaat 36821593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 3590299 - 3590205
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||| ||||||||| |||| || ||||||||| |||||||||||||| ||||||  |||||||   ||||||||| |||| ||||||| |||||||    
T  3590299 gctaatttagttcgttaattttttta-ttaaatttggttcatcaaattaaa-tacaaactaaaaaga---agaattgatgaaggacaataaaagaaaata 3590205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 7637432 - 7637381
Alignment:
Q  155 ttaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgata 207  Q
    ||||||||  ||||||||||||||| ||||||||||| |||||||||||||||    
T  7637432 ttaaatttatttcatcaaattaaat-acaaagcaaaatgaaggagaattgata 7637381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 924269 - 924232
Alignment:
Q  190 aaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  924269 aaagaaagagaattgataaagggcaataaagaaaaata 924232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 30810937 - 30810839
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30810937 gctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaat-acaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 30810839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 39251706 - 39251607
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||    
T  39251706 gctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattaccaaccaaaaagaaggagaattgataaagggcaataaagaaaaata 39251607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 45150827 - 45150729
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||| ||||||||||| |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45150827 gctaatttggttcattaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 45150729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 48254372 - 48254471
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||  ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  48254372 gctaatttaattccttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaagagaattgataaagggcaataaagaaaaata 48254471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 11263920 - 11263822
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||| ||||||||||| ||| |||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11263920 gctaatttggttcattaagttttctgattgaattttgttcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 11263822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 28182599 - 28182501
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  28182599 gctaatttggttcgttaagtcttctgattaaatttggttcatcaaattaa-ttacaaagcaaaaagaaggagaactgataaagggcaataaaagaaaata 28182501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 50392689 - 50392787
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| ||||||||||||||| |||||||| ||||||||||||||||    
T  50392689 gctaatttggttcgttaagttttctgattaaatttggttcatcaaattaaa-tacaaaacaaaaagaaggagaaatgataaagagcaataaaggaaaata 50392787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 51407693 - 51407595
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||| |||||||| |||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51407693 gctaatttgtttcgttaaattttctgattaaattcggttcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 51407595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 51229956 - 51229858
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||  |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  51229956 gctaatttggtcggttaagttttcttattaaatttgattcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaagggatataaaagaaaata 51229858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 42074608 - 42074523
Alignment:
Q  141 gttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42074608 gttaagttttctgattaaatttggttcatcaaattaa-ttacaaagcaaaaagaaggagaattggtaaagggcaataaaggaaaata 42074523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 42274746 - 42274648
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||| |||||||||| || ||||||| ||||||||||||| |||||||| ||||||||||| ||||||||| ||||||||||||||||||    
T  42274746 gctaatttggttcgataagttttctgatcaaatttggttcatcaaattaa-ttacaaaggaaaaagaaggaaaattgataacgggcaataaaggaaaata 42274648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 48181298 - 48181200
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||| |||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  48181298 gctaatttggctcgttaagttttctgattaaatttggttcatgaaattaa-ttacaaagcaaaaagaagaagaatttataaagggcaataaagaaaaata 48181200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 53687246 - 53687344
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||| |||||||||||| ||| ||||||  |||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  53687246 gctaatttggttggttaagttttcttatttaatttggctcatcaaattaa-ttacaaagcaaaatgaaggagaattgataaagggcaataaagaaaaata 53687344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 33025685 - 33025765
Alignment:
Q  146 gttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||| |||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| | ||||||||||||    
T  33025685 gttttctgattaaatttggttcatcgaattaa-ttacaaagcaaaaagaaggagaattgataaagggtagtaaaggaaaata 33025765  T

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Target: chr3; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 130 - 227
Target Start/End: Original strand, 45488979 - 45489078
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaat----tacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaa 225  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||| ||||    ||||||||||||  |||||| ||||||||||| |||||||||||||    
T  45488979 taatttggttcgttaaattttctagttaaatttggttcatcaaatcaaattaaatacaaagcaaaa--aaggaggattgataaaggacaataaaggaaaa 45489076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 44328882 - 44328783
Alignment:
Q  128 gctaatttggttcgttaagttttcta-attaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaat 226  Q
    |||||||||||||||||  |||| |  |||||||||| || |||||||||||| ||||| ||||||||| |||||||||||||||  |||||||||||||    
T  44328882 gctaatttggttcgttactttttttttattaaatttggtttatcaaattaaat-acaaaccaaaaagaatgagaattgataaaggataataaaggaaaat 44328784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 28883919 - 28883821
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||| | || | ||||||| || | ||| ||||||||| |||||  |||||||||||||||||||||||| | |||||||||||||    
T  28883919 gctaatttggttcgttaaatattttgattaaatgtggtacattaaattaaat-acaaactaaaaagaaggagaattgataaaggacgataaaggaaaata 28883821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 44610695 - 44610792
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||| |||||||  |||| | |||||||||| ||||||||||||||| ||||| | ||||||||||| ||||||||||| |||||||| ||||||    
T  44610695 gctaatttgattcgttagatttt-tgattaaatttggttcatcaaattaaat-acaaatcgaaaagaaggagcattgataaaggacaataaagaaaaata 44610792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 28963737 - 28963829
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaag 220  Q
    ||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28963737 gctaatttaattcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaagagaattgataaagggcaataaag 28963829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 30418262 - 30418364
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagg---gcaataaaggaaa 224  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||    
T  30418262 gctaatttgattcgttaagttttctaattaaatttggttcatcaaattaaattacaaagcaaaaagaaggagaattgataaaggagaacaataaaggaaa 30418361  T
Q  225 ata 227  Q
    |||    
T  30418362 ata 30418364  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 22606229 - 22606327
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||| |||||||||| |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  22606229 gctaatttggttcgctaagttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaagggcaataaagaaaaata 22606327  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 50523740 - 50523838
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  50523740 gctaatttggttcgttaaattttctgattaaatttggttcatcaaattaaa-tacaaagcaaaaagaagaagaattgataaagggcaataatggaaaata 50523838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 53663504 - 53663602
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  53663504 gctaattaggttcgttaagttttctgattaaatttggttcatcaaattaa-ttacaaagcaaaaagaaggaggattgataaagggtaataaaggaaaata 53663602  T

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Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 227
Target Start/End: Complemental strand, 39733037 - 39732941
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||| |||| ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  39733037 taatttggtttgttatgttttctgattaaatttggttcatcaaattaaat-acaaagcaaaaagaaggagaattgataaagggcgataaaggaaaata 39732941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 38768020 - 38767922
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||| |||||||||  |||||||||  ||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||    
T  38768020 gctaatttggttcgctaagttttccgattaaattttgttcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaagtgaaataaaggaaaata 38767922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 8510387 - 8510297
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaa 219  Q
    ||||||||||||||||||||||||| |||||||||| ||||| |||||| | |||||||||||| ||||||||||||||||||| |||||||    
T  8510387 gctaatttggttcgttaagttttctgattaaatttggttcattaaattaga-tacaaagcaaaaggaaggagaattgataaaggccaataaa 8510297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 45106035 - 45105937
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||| |||||| |||||||||||| |||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||||| | ||||||||||||    
T  45106035 gctaaattggttggttaagttttcttattaaatttggttcatcaaattaa-ttacaaagtaaaaagaaagagaattgataaagggaagtaaaggaaaata 45105937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 48407181 - 48407083
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||| |||| || ||||| | |||||||||  ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  48407181 gctaatttgattcgctacgttttatgattaaattttgttcatcaaattaa-ttacaaagcaaaaagaaagagaattgataaagggcaataaagaaaaata 48407083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 49724008 - 49723914
Alignment:
Q  129 ctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||||||| |||||| |||||||||| || |||||||| ||||||||||||||||||||||||||  |||||||| ||||||||||||||    
T  49724008 ctaatttggttcgttaatttttctgattaaatttggtttatcaaatt-aattacaaagcaaaaagaaggagaat--ataaaggg-aataaaggaaaata 49723914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 29385913 - 29386003
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||| |||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| |||||| ||||||    
T  29385913 gctaatttggttcgttaaattttctaattaaatttgattcatca--------tacaaagcaaaaagaaggagaattgataaagggc-ataaagaaaaata 29386003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 26457340 - 26457242
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||| ||||| |||||||||||||||||| | | |||||||| || ||| ||||||||||||| |||||||||||||| |||||||||| |||||    
T  26457340 gctaatttgattcgtcaagttttctaattaaattcggtacatcaaatcaa-ttaaaaagcaaaaagaatgagaattgataaagagcaataaagggaaata 26457242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 225
Target Start/End: Original strand, 53403985 - 53404076
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaa 225  Q
    ||||||||||||||||| ||||||| |||     || ||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||||||||    
T  53403985 gctaatttggttcgttatgttttctgatt-----tggttcatcaaattaa-ttacaaagcaaaaaaaaggagaattgataaaggataataaaggaaaa 53404076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 51677327 - 51677233
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||| ||||| | |||| | |||||||||| |||||||||||||||   |||  ||||||||||||||||||||||||| |||||| |||||||    
T  51677327 gctaatttggatcgttgaattttttgattaaatttggttcatcaaattaaat---aaa--aaaaagaaggagaattgataaagggaaataaaagaaaata 51677233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 16202966 - 16203061
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||| |||| |||| |||| | |||||||||| |||||||||||||| |||||| ||||||||   ||||||||| |||| | |||||||||||||    
T  16202966 gctaatttagttcattaatttttttgattaaatttggttcatcaaattaaa-tacaaaccaaaaaga---agaattgatgaaggacgataaaggaaaata 16203061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 4317 - 4221
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||   ||||||||||||||||||||||||||||||||||    
T  4317 gctaatttggttcgttaagttttctaattaaatttggttcatcaaattaaattacaattcaaa---aaggagaattgataaagggcaataaaggaaaata 4221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 32935 - 33029
Alignment:
Q  132 atttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    ||||||||||||| ||||||| |||||||||  ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32935 atttggttcgttaggttttctgattaaattttgttcatcaaattaa-ttacaaagcaaaaagaaggataattgataaagggcaataaaggaaaata 33029  T

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Target: scaffold0006 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 91761 - 91667
Alignment:
Q  132 atttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||||| |||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  91761 atttggttcgttaaattttctgaataaatttggttcatcaaattaa-ttacaaagcaaaaagaaggagaattgataaaagacaataaaggaaaata 91667  T

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Target: scaffold0069 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 17040 - 16948
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaagg 221  Q
    |||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||| | |||||||||    
T  17040 gctaatttggttcgttaagtttcctaaataaatttggttcatcaaatt-aattacaacgcaaaaagaaggagaattgataaaagacaataaagg 16948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 365801 - 365731
Alignment:
Q  154 attaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaa 224  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  365801 attaaatttggttcatcaaattaaattacaaagcaaaaagaagcagaattgataaaaggcaataaaggaaa 365731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 20838366 - 20838459
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaa 224  Q
    |||||| |||||||||||||| | |||||||||| |||||||||||||| |||||||||||||||| | |||||||||||| |||||||||||||    
T  20838366 taatttagttcgttaagttttttgattaaatttggttcatcaaattaaa-tacaaagcaaaaagaatgtgaattgataaagagcaataaaggaaa 20838459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 27825229 - 27825130
Alignment:
Q  128 gctaatttggttcgttaagttttcta-attaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaat 226  Q
    |||||||||||||||||| |||| |  |||||||||| ||||||||||||||| |||||  |||||||||||||||||||||||  ||||||||||||||    
T  27825229 gctaatttggttcgttaaattttttggattaaatttggttcatcaaattaaat-acaaacgaaaaagaaggagaattgataaagaacaataaaggaaaat 27825131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 10683382 - 10683304
Alignment:
Q  130 taatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagg 211  Q
    |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||  ||||   ||||||||||||||||||    
T  10683382 taatttggtttgttaaattttctaattaaatttggttcatcaaattaaattacaattcaaa---aaggagaattgataaagg 10683304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 30134372 - 30134278
Alignment:
Q  128 gctaatttggttcgttaagttttctaattaaatttgattcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||||||||||  ||||| |||| | |||||||||| || ||||||||||| |||||| ||||   ||||| ||||||| |||| |||||||||||||||    
T  30134372 gctaatttggtatgttaacttttttgattaaatttggtttatcaaattaaa-tacaaa-caaa---aaggataattgatgaaggacaataaaggaaaata 30134278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 9601 - 9661
Alignment:
Q  166 tcatcaaattaaattacaaagcaaaaagaaggagaattgataaagggcaataaaggaaaata 227  Q
    |||| ||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||    
T  9601 tcatgaaattaaat-acgaagcaaaaagaaggagaattgataaagggcaataaagaaaaata 9661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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