View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_39 (Length: 227)
Name: NF1970_low_39
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 4242376 - 4242580
Alignment:
| Q |
9 |
cagaacctgtggcaggaaattgatgcgattgaagattgtaccatggtgtgcactaaagatgttgagacatataccaacaaactgaatgcacaacgtgtat |
108 |
Q |
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| T |
4242376 |
cagaaactgtggcaggaaattgatgcgattgaagattgtaccatggtgtgcactaaagatgttgagacatataccaacaaactgaatgcgcaacgtgtat |
4242475 |
T |
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| Q |
109 |
acatattcctagcaggacttgattcacacttggatggggtacgtggtcgaattcttgcaaccataccacttccaggtatacaaactgtgtatacaaatgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4242476 |
acatattcctagcaggacttgattcacacttggatggggtacgtggtcgaattcttgcaaccataccacttccaggtatacaaactgtgtatgcaaatgt |
4242575 |
T |
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| Q |
209 |
ctgtg |
213 |
Q |
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||||| |
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| T |
4242576 |
ctgtg |
4242580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 40088816 - 40089020
Alignment:
| Q |
9 |
cagaacctgtggcaggaaattgatgcgattgaagattgtaccatggtgtgcactaaagatgttgagacatataccaacaaactgaatgcacaacgtgtat |
108 |
Q |
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| T |
40088816 |
cagaaactgtggcaggaaattgatgcgattgaagattgtaccatggtgtgcactaaagatgttgagacatataccaacaaactgaatgcgcaacgtgtat |
40088915 |
T |
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| Q |
109 |
acatattcctagcaggacttgattcacacttggatggggtacgtggtcgaattcttgcaaccataccacttccaggtatacaaactgtgtatacaaatgt |
208 |
Q |
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| T |
40088916 |
acatattcctagcaggacttgattcacacttggatggggtacgtggtcgaattcttgcaaccataccacttccaggtatacaaactgtgtatgcaaatgt |
40089015 |
T |
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| Q |
209 |
ctgtg |
213 |
Q |
| |
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||||| |
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| T |
40089016 |
ctgtg |
40089020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 40457489 - 40457443
Alignment:
| Q |
29 |
tgatgcgattgaagattgtaccatggtgtgcactaaagatgttgaga |
75 |
Q |
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| T |
40457489 |
tgatgccattgcaaattgtaccatggagtgcactaaagatgttgaga |
40457443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 12459175 - 12459379
Alignment:
| Q |
9 |
cagaacctgtggcaggaaattgatgcgattgaagattgtaccatggtgtgcactaaagatgttgagacatataccaacaaactgaatgcacaacgtgtat |
108 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12459175 |
cagaaactgtggcaggaaattgatgagattgaagattgtaccatggtgtgcaataaagatgttgagacatataccaacaaactgaatgcgcaacgtgtat |
12459274 |
T |
|
| Q |
109 |
acatattcctagcaggacttgattcacacttggatggggtacgtggtcgaattcttgcaaccataccacttccaggtatacaaactgtgtatacaaatgt |
208 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12459275 |
acatattcctagcaggacttgattcacacttggatggggtacgtggtcgaattcttgcaaccataccacttccaggtatacaaactgtgtatgcaaatgt |
12459374 |
T |
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| Q |
209 |
ctgtg |
213 |
Q |
| |
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||||| |
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|
| T |
12459375 |
ctgtg |
12459379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 9 - 213
Target Start/End: Original strand, 8017238 - 8017442
Alignment:
| Q |
9 |
cagaacctgtggcaggaaattgatgcgattgaagattgtaccatggtgtgcactaaagatgttgagacatataccaacaaactgaatgcacaacgtgtat |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8017238 |
cagaaactgtggcaggaaattgatgcgattgaagattgtaccatggtgtgcaataaagatgttgagacatataccaacaaactgaatgcgcaacgtgtat |
8017337 |
T |
|
| Q |
109 |
acatattcctagcaggacttgattcacacttggatggggtacgtggtcgaattcttgcaaccataccacttccaggtatacaaactgtgtatacaaatgt |
208 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
8017338 |
acatattcctagcaggacttgattcacacttggatggggtacgtggttgaattcttgcaaccataccactaccaggtatacaaactgtgtatgcaaatgt |
8017437 |
T |
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| Q |
209 |
ctgtg |
213 |
Q |
| |
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||||| |
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|
| T |
8017438 |
ctgtg |
8017442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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