View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1970_low_4 (Length: 552)
Name: NF1970_low_4
Description: NF1970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1970_low_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 267 - 552
Target Start/End: Complemental strand, 53676596 - 53676311
Alignment:
| Q |
267 |
taaggttagccgaatagaagcaattaggacacgatctttataggtcatgatcatggctaataggatttaggctcaaacacatttgtctgtaaatatcact |
366 |
Q |
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| T |
53676596 |
taaggttagccgaataatagcaattaggacacgatctttatatgtcatgatcatggctaataggatttaggctcaaacacatttgtctgtaaatatcact |
53676497 |
T |
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| Q |
367 |
tgtaatttgtaaactttatatcagagagactcaatgaatcaaataacttagttttaaaatattgtttgtcacacttaaccctctttgtagaagctaagaa |
466 |
Q |
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| T |
53676496 |
tgtaatttgtaaactatatatcagagagactcaatgaatcaaataacttagttttaaaatattgtttgtgacacttaaacctctttgtagaagctaagaa |
53676397 |
T |
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| Q |
467 |
acacgcagtgaagagaaaataaataaaatgttaaaagataaactttaaaattggacaataatattatttctacataacgccttcac |
552 |
Q |
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| T |
53676396 |
acacgcagtcaagagaaaataaataaaatgttaaaagataaactttaaaattggacaataatattatttctacataacgccttcac |
53676311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 53676869 - 53676622
Alignment:
| Q |
19 |
tctatagccgagtgtataataaattgatattagaaaagtcgaagattgtttagtcgagtcattcttatgtggagagggtctcaatgtaagtggataattt |
118 |
Q |
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| T |
53676869 |
tctatagccgagtgtataatcaattgatattagaaaagtcgaagattgtttagtcgaatcattcttatatggagaggggctcaatgtaagtggataattt |
53676770 |
T |
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| Q |
119 |
agtctaaagaatctacttcttgttttcaagccttcgaataacaaacacagctagaatctaggaagcgttatcnnnnnnnnnnnnnnnnnntgcgcttgaa |
218 |
Q |
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| T |
53676769 |
aatctaaagaatctacttcttgttttcaagccttcgaataacaaacacagctagaatctaggaagcgttatcaaagagagagagagagaatatgcttgaa |
53676670 |
T |
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| Q |
219 |
atgagtaatagaacaagacacataaagaccaacactataaaaaataac |
266 |
Q |
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| T |
53676669 |
atgagtaatagaacaagacacataaagaccaatactatacaaaataac |
53676622 |
T |
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